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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtggatcaagttccttttccacctcttttactgtttggactcaaaggattattcagtgttctcagtggcttagtgttttgtttctttggtggtatag

Basic information

species Glycine max
transcript GLYMA12G32060.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G32060.3 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g47870.1 (Oryza sativa), 5'ss of exon 4
-------------------------------------CCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtggatcaagttccttttccacctcttttactgtttggactcaaaggattattcagtgttctcagtggcttagtgttttgtttctttggtggtatag
                                     ||| |||||||||||||||||||| || |||||||||  || |  |  |    |   ||||    || | || |  |  |   |    |  ||   |||| | ||| |||| | || | |||  |   ||      
GAGTTTGCAACCATGCATTCCACTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgccctggaaaatg--ccac----ttaattggtgtggttgttacctctgctc---gttcaccgtgccttacttttctattttatctatgcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4284798|gb|AI440826.1|AI440826
EST:     CCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG                         ATAATAGCGAGTGGGAATTTCAGAAATACGGTCACTAGAACTTTGATGCGG
genomic: CCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtggat ... ggtggtatagATAATAGCGAGTGGGAATTTCAGAAATACGGTCACTAGAACTTTGATGCGG