1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGAAATAGCAGACTTTGTCTTCTCCAACAAGCTTCCTTTGGTAACAATTTTTACAAGAGAAAGTGCCCCATCAGTCTTCGAAAATCCAATCAAGAAACAGgtaggtatttatatacatgtattttattatattgtaatctcttgaagaaaaatattcttgataacattgctctgtgtttgaaacttcacttttag
species | Glycine max |
transcript | GLYMA12G29550.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTACAAGAGAAAGTGCCCCATCAGTCTTCGAAAATCCAATCAAGAAACAG TTGTTGCTGTTTGCAACTTCAAATGATTCAGAGAAGTTGATCCCTGCATTTEST: gi|19052857|gb|BM731524.1|BM731524
genomic: TTACAAGAGAAAGTGCCCCATCAGTCTTCGAAAATCCAATCAAGAAACAGgtaggtattt ... tcacttttagTTGTTGCTGTTTGCAACTTCAAATGATTCAGAGAAGTTGATCCCTGCATTT
EST: TTACAAGAGAAAGTGCCCCATCAGTCTTCGAAAATCCAATCAAGAAACAG TTGTTGCTGTTTGCAACTTCAAATGATTCAGAGAAGTTGATCCCTGCATTTEST: gi|9902983|gb|BE611951.1|BE611951
genomic: TTACAAGAGAAAGTGCCCCATCAGTCTTCGAAAATCCAATCAAGAAACAGgtaggtattt ... tcacttttagTTGTTGCTGTTTGCAACTTCAAATGATTCAGAGAAGTTGATCCCTGCATTT
EST: TTACAAGAGAAAGTGCCCCATCAGTCTTCGAAAATCCAATCAAGAAACAG TTGTTGCTGTTTGCAACTTCAAATGATTCAGAGAAGTTGATCCCTGCATTT
genomic: TTACAAGAGAAAGTGCCCCATCAGTCTTCGAAAATCCAATCAAGAAACAGgtaggtattt ... tcacttttagTTGTTGCTGTTTGCAACTTCAAATGATTCAGAGAAGTTGATCCCTGCATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAATAGCAGACTTTGTCTTCTCCAACAAGCTTCCTTTGGTAACAATTTTTACAAGAGAAAGTGCCCCATCAGTCTTCGAAAATCCAATCAAGAAACAGgtaggtatttatatacatgtattttattatattgtaatctcttgaagaaaaatattcttgataacattgctctgtgtttgaaacttcacttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA