Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactatactcttccattctcatttccacgcatcgtttctgtctcccaacttgatttgatttgatttgatttttcag

Basic information

species Glycine max
transcript GLYMA12G28670.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208079367|gb|GD877095.1|GD877095
EST:     ACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: ACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|192299444|gb|FG990782.1|FG990782
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|298172183|gb|HO021775.1|HO021775
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCACACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|192315107|gb|FK009931.1|FK009931
EST:     TCGACTAAAGGGT-ATCAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: TCGACTAAAGGGTGA-CAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|6134030|gb|AW132480.1|AW132480
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|192333250|gb|FK026131.1|FK026131
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|213618494|gb|DB963395.1|DB963395
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|298184141|gb|HO029354.1|HO029354
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAC                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|41145772|gb|CK605983.1|CK605983
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|254316505|gb|GR828042.1|GR828042
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|24135648|gb|BU926158.1|BU926158
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|213587115|gb|DB959536.1|DB959536
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|7233496|gb|AW568841.1|AW568841
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|209709460|gb|BW668376.1|BW668376
EST:     TCGACTAAAGGGTGACAAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: TCGACTAAAGGGTGACAA-CGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|298191545|gb|HO039024.1|HO039024
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTTTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|12689164|gb|BG155500.1|BG155500
EST:     GACAACGCTTTGTTCTCATCTTCTGCCATGGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: GACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|208215289|gb|GE011072.1|GE011072
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|6134008|gb|AW132458.1|AW132458
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|15814101|gb|BI786376.1|BI786376
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT