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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTTAATCCAAATCCAGATGCAATGTCTAAGATGATAACAGAAAACGCAAGCGAGGAATTCCTGCATTCATTGAGTAATTATTGTTCACTTCAGgtaaataagatccttttttttattggtcacctgctatttacttggaacttcatttatgtcctgcatgctttcacgagaaacgccaaatctgaacctcacc...

Basic information

species Glycine max
transcript GLYMA12G28490.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G28490.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g01470.1 (Oryza sativa), 5'ss of exon 4
ATTCTTAATCCAAATCCAGATGCAATGTCTAAGATGATAACAGAAAACGCAAGCGAGGAATTCCTGCATTCATTGAGTAATTATTGTTCACTTCAGgtaaataagatccttttttttat-tggtcacctgctatttacttggaacttcatttatgtcctgca-tgctttcacgaga---aacgccaaatctgaacctcacc
|||||||| ||||||||||| |||||||| |||||  |||| |||||  | || ||||| ||| || ||||||||||||| || ||| | |||||||||||    |   | ||||   | |  |||||| |  |  |  || |     ||  |||   |  | | | ||||    |   ||   |||   ||||       
ATTCTTAACCCAAATCCAGAAGCAATGTCAAAGATCGTAACTGAAAATTCCAGTGAGGAGTTCTTGTATTCATTGAGTAACTACTGTGCTCTTCAGgtaaactgaagaatattttcagtatattcacct-cagtgaaaatgaataaatatgcatgaaatataatccattcaatttatctaataacaatggtgaatta----

upper sequence: GLYMA12G28490.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G49810.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTCTTAATCCAAATCCAGATGCAATGTCTAAGATGATAACAGAAAACGCAAGCGAGGAATTCCTGCATTCATTGAGTAATTATTGTTCACTTCAGgtaaataagatccttttttttattggtcacctgctatttac--ttggaacttcat----ttatgtcctgcatgctttcacgagaaacgccaaatctgaacctcacc
|||||||||||||| ||||| || ||||||||| |||| |||||||| ||||| |||||||| || |||||  ||||||| |||||| | ||||||||||   |  |  |||            ||     |  ||   || | |  | |      ||  ||||  |  || |   |       |||| |            
ATTCTTAATCCAAACCCAGAAGCTATGTCTAAGCTGATCACAGAAAATGCAAGTGAGGAATTTCTCCATTCGCTGAGTAACTATTGTGCCCTTCAGgtaagggaatttttttcccagcaaaaatactctgaaggtatcattagtatgttagaaagctagttcctaga-actcttctggtgcgtcccaatttcatgtt-----

upper sequence: GLYMA12G28490.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0035g01920.t01 (Vitis vinifera), 5'ss of exon 5
ATTCTTAATCCAAATCCAGATGCAATGTCTAAGATGATAACAGAAAACGCAAGCGAGGAATTCCTGCATTCATTGAGTAATTATTGTTCACTTCAGgt-aaataagatccttttttttattggtcacctgctatttacttggaacttcatttatgtcctgcatgctttcacgagaaacgccaaatctgaacctcacc
||||| || |||||||| |||||||||||||||||||| |||||||| || ||||||||||| ||  ||||| |||||||||||||| ||||||||||   |  ||||  ||||||| || ||      |  ||||         |  | |||  |  || ||| ||  |  |       ||     |||  | |  
ATTCTCAACCCAAATCCTGATGCAATGTCTAAGATGATTACAGAAAATGCCAGCGAGGAATTTCTATATTCACTGAGTAATTATTGTGCACTTCAGgttggaagagattttttttttgataggatggaagagattttaactattttgaaattaattgatgtatg-ttagagaattgttctcatgctagaattttagt