Sequence
atgc intronic sequence ATGC exonic sequenceAGAGGATGAAATTGAGGACATTCAGAAGgtatacatagaatcttacagattactactactttacaataggcaccttttaccaaatgtttaatgttatttcttcaattaattttttttttccag
Basic information
species | Glycine max |
transcript | GLYMA12G27300.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G27300.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv19s0014g02310.t01 (Vitis vinifera), 5'ss of exon 4
AGAGGATGAAATTGAGGACATTCAGAAGgtatacat-agaatctt-acagattactactactttacaataggcaccttttac-caaatgtttaatgttatttcttcaattaattttttttttccag
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AGAAGATGAAATTGAGGACATTCAGAAGgtattttccagagtcttgatcaattaccagta------aatga--atctaccacacaaatgattag-gttgcttatctaaat--tctttttcttccag
upper sequence: GLYMA12G27300.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S59_173V6.2 (Physcomitrella patens), 5'ss of exon 1
---------------------------AGAGGATGAAATTGAGGACATTCAGAAGgtatacata---gaatcttacagattactacta-----ctttacaataggcaccttttaccaaat---gtttaa---tgttatttcttcaattaattttttttttccag----------------------------------------------------------------------------------------
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GTGGTGCGCAATTTTCCTTGTTATCAGAGAGGATGAAGTTGAGGACATTCAGAAGgtaggtttgtttggtttttctttattaatgtaaataattttaatattaaatttcttattctagctccagtctaaatttggtactgccctgatggatagatgtcttcaagatgtttgttcctcattagatcttaagtgctctatggttacaaggactttacggagacagctgattggttctttatctttgtttctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19270719|gb|BM886975.1|BM886975EST: AGAGGATGAAATTGAGGACATTCAGAAG GAAATTTCTGTTCTGTCGCAATGTCGATCTCCATACATTACTGAGTATTAT
genomic: AGAGGATGAAATTGAGGACATTCAGAAGgtatacatag ... ttttttccagGAAATTTCTGTTCTGTCGCAATGTCGATCTCCATACATTACTGAGTATTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAGGATGAAATTGAGGACATTCAGAAGgtatacatagaatcttacagattactactactttacaataggcaccttttaccaaatgtttaatgttatttcttcaattaattttttttttccag
GAGGAT
- AGGATG