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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGAGTTCTTCCTCCACAGTTACTTTTAAAATGGCCTAAAGAAGCTTCATTTTGCTTGTGGTTATTACATCCTGAGCCTAATAGTCGTCCAACAATAGGgtaaattttcttcatcacatgccttttacatatcaaatatccaaattgtttgcaaatgtttgaattacctgccacttgtatgcattgttttctttttccc...

Basic information

species Glycine max
transcript GLYMA12G25240.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G25240.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G53090.2 (Arabidopsis thaliana), 5'ss of exon 2
ATAGAGTTCTTCCTCCACAGTTACTTTTAAAATGGCCTAAAGAAGCTTCATTTTGCTTGTGGTTATTACATCCTGAGCCTAATAGTCGTCCAACAATAGGgtaa--attttcttcatcacatgccttttacatatcaaatatccaaattgtttgcaaatgtttgaattacctgccacttgtatgcattgttttctttttccc--
|| | |||||||| || ||| || |  | || ||||||||||||||||| ||||||||||||||| | |||||||||||||   |||| ||| | ||  ||| |  |||   |   ||       ||||   | |||| |    || || | | |      || |||||   |    |||| | | |||| ||   |||  |  
ATCGTGTTCTTCCCCCTCAGATATTACTCAATTGGCCTAAAGAAGCTTCCTTTTGCTTGTGGTTACTGCATCCTGAGCCTAGCTGTCGACCATCGATGAGgtgatgattgattctctctttgatgtttttagtttcaattggaaaagttttgtcc------tttaattaagagta--ttgtctcctttgtctttacttttgcag

upper sequence: GLYMA12G25240.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G15354.1 (Arabidopsis thaliana), 5'ss of exon 2
ATAGAGTTCTTCCTCCACAGTTACTTTTAAAATGGCCTAAAGAAGCTTCATTTTGCTTGTGGTTATTACATCCTGAGCCTAATAGTCGTCCAACAATAGGgtaaattttcttcatcacatgccttttacata--tcaaatatccaaattgtttgcaaatgtttgaattacctgccacttgtatgcattgttttctttttccc----
|| | |||||||| || ||| || |  | ||||| || ||||||||||| || |||||||||||| | ||||||||||| | | |||| ||| ||||  |||  |  |  |   | | |   | | | | ||  |  |  ||    | | | ||  |   |||  | ||| ||  |||  |  | | | | |  ||| |       
ATCGCGTTCTTCCGCCTCAGATATTGCTCAAATGTCCAAAAGAAGCTTCTTTCTGCTTGTGGTTACTGCATCCTGAGCCAACTTGTCGACCATCAATGAGgtttacatattgtcttatacttcatgttcttaggttgagcattgttagtctctgtcatctttt--actacatggaactaatggggaatttgtcttttatggtgcag