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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGTTGACTTCTGAACTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCATGGGCAGGGGCTGCATATTATTTGCTATTATTTATGCTTGCTAGTCATgtaagttttgcttaattttggttgttgaattatgttagacttcccagcatttttttaagttacttttggagttaatacactttctaagtagttattatgctattacacttgctatctagctttatgatgcatcaactttgacaagaatttattttgcatccttttccgtcaatgactctttgcag

Basic information

species Glycine max
transcript GLYMA12G23890.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G23890.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G023037_T01 (Zea mays), 5'ss of exon 5
ACCGTTGACTTCTGAACTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCATGGGCAGGGGCTGCATATTATTTGCTATTATTTATGCTTGCTAGTCATgtaagttttgcttaattttggttgttgaattatgttagacttcccagcatttttttaagttacttttggagttaatacactttctaagtagttattatgctattacacttgctatctagctttatgatgcatcaactttgacaagaatttattttgcatccttttccgtcaatgactctttgcag
 ||  |||   | ||  | || || ||||||||||| |||  ||||||||| ||||| || ||||| |||||| | ||||  |||||||| ||| | |||||||||  | |   |   |   |  |  || |  ||| | || ||| |||| |||  | | | |  || ||   | |  | |   |    | |   | ||  || |||                                                                             
CCCTGTGATCACAGATTTGAAAAGGACAGCTGGTGTTTTTATTGAAACTGCTTGGGCTGGTGCTGCTTATTATCTTCTATGGTTTATGCTGGCTGGGCATgtaagtgcttccataagctatgtact--atca-attatattttcca-cattcttt--actcattagtgaag--gacaggcctggcacagtggtgagaagcctttccac-----------------------------------------------------------------------------

upper sequence: GLYMA12G23890.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0037g00230.t01 (Vitis vinifera), 5'ss of exon 5
ACCGTTGACTTCTGAACTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCATGGGCAGGGGCTGCATATTATTTGCTATTATTTATGCTTGCTAGTCATgtaagttttgcttaattttggttgttgaattatgttagacttcccagcatttttttaagttacttttggagttaatacactttctaagtagttattatgctattacacttgctatctagctttatgatgcatcaactttgacaagaatttattttgcatccttttccgtcaatgactctttgcag
||| ||  |||| ||||| || || ||  |||||||||||||||||||||| ||||| || |||||||||||||||||  | |  |||||||||||||||||||||   || | |||    | || |  || | |||   ||    |   |  |||    || || | |  | |   ||||   |  ||  |  ||    | ||    |||                                                                          
ACCCTTATCTTCAGAACTGAAAAGGACTTCTGGTGTCTTTGCTGAAACTGCTTGGGCTGGTGCTGCATATTATTTGCTTCTGTACATGCTTGCTAGTCATgtaagt---gcctgattgatttagtagctttgtctta---ttgatggttctcatttgcactaattgtaggatca---cactgctttggt--tctttgccttgtttatgttg--------------------------------------------------------------------------