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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGATTAGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCGGAATGCTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGgttagagtcttgtgttgattgctacatgcttcatgaaactcaatattataacacgctttaaacattcttctggaatttataaatgaagatctttaacttcctttttcttaattttttgaggtcaatatgattgtatataatgctcaaatccatagtcattcacag

Basic information

species Glycine max
transcript GLYMA12G19010.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G19010.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G017845_T02 (Zea mays), 5'ss of exon 4
TGAGATTAGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCGGAATGCTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGgttagagtcttgtgttgattgctacatgcttcatgaaactcaatattataacacgctttaaacattcttctggaatttataaatgaagatctttaacttcctttttcttaattttttgaggtcaatatgattgtatataatgctcaaatccatagtcattcacag
 |||||| | || ||  | ||| | ||||||||||||| |  ||||||||||||||| ||| |||||||||| || |  |  || ||   ||| |||||||| |   | |||| ||  ||  ||   | ||| |     ||||| |  | ||   ||| || |  |  |   |                                                                                            
AGAGATTGGTCACGGGCGTTTTCTCAGTTGCATGGGAGCTGTTTGGCATCCGGAATGTTTTCGTTGCCATGCATGTAGTCAACCTATATATGACTATGAGgtaacttttttgt-ttactttttagcagtttctt-----tcaatgtactgac---cttaaagccatgctgcag--------------------------------------------------------------------------------------------

upper sequence: GLYMA12G19010.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 6
TGAGATTAGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCGGAATGCTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGgttagagtcttgtgttgattgctacatgcttcatgaaactcaatattataacacgctttaaacattcttctggaatttataaatgaagatctttaacttcctttttcttaattttttgaggtcaatatgattgtatataatgctcaaatccatagtcattcacag
 |||||| | |||||||||| ||||||||||||||| | |  ||||||||| ||||| ||| |||||| ||||||    ||||| ||   |||  |||||||   | ||  ||   ||||  | |  | ||             |||       |||    | || |||   | ||  | |  |||     |||  |     ||||  |  || | ||   |  |  || |  | |  | |  |    | | | |  |       
CGAGATTGGTCATGGAAGATATTTGAGTTGCATGGGTGCTGTTTGGCATCCAGAATGTTTTCGTTGCCGTGCTTGTGGGCTTCCCATTTTTGAACATGAGgtccaaatccagttcagatttattctagtttt----ggtctggcattg------gctaatgaaatgctt---ggatccaaagctga-----ttttccagtaattttggtggttctatggaatgcacttgctaattttcattttttcctttctttgatag------

upper sequence: GLYMA12G19010.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ15933 (Selaginella moellendorffii), 5'ss of exon 4
TGAGATTAGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCGGAATGCTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGgttagagtcttgtgttgattgctacatgcttcatgaaactcaatattataacacgctttaaacattcttctggaatttataaatgaagatctttaacttcctttttcttaattttttgaggtcaatatgattgtatataatgctcaaatccatagtcattcacag
    ||  | | |||| | ||| | || |||||||||||||  |||||||||||||||||| | |||    | |||||    || ||  | | || |||||| |  |||||| |||    | |    | |||  | |    |  |  |    |   ||||  ||                                                                                                     
GACCATCGGACCTGGACGTTTTCTAAGCTGCATGGGAGGTTTGTGGCATCCGGAATGCTTTAGATGCACGTCGTGCAACAAACCGATTTCGGGTTCTGAGgt-atggtcttg-gttttacgttgttggtttctcggattgtataagcaggtgatcttttatgcag----------------------------------------------------------------------------------------------------

upper sequence: GLYMA12G19010.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ33296 (Selaginella moellendorffii), 5'ss of exon 4
TGAGATTAGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCGGAATGCTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGgttagagtcttgtgttg-attgctacatgcttcatgaaactcaatattataacacgctttaaacattcttctggaatttataaatgaagatctttaacttcctttttcttaattttttgaggtcaatatgattgtatataatgctcaaatccatagtcattcacag
    ||  | | |||| | ||| | || |||||||||||||  |||||||||||||||||| | |||    | |||||    |||||  | | || ||||||  |      || ||| |||| |    | |||  | |    |  |       |   ||||  ||                                                                                                     
GACCATCGGACCTGGACGTTTTCTAAGCTGCATGGGAGGTTTGTGGCATCCGGAATGCTTTAGATGCACGTCGTGCAATAAACCAATTTCGGGTTCTGAGgtatggtcgcagttttgcattgttg---gtttctcggattctataagcgggtgatcttttatgcag----------------------------------------------------------------------------------------------------