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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGAATATGTTCCCGAATCAATGTACCGAGTTATAAAGCACTACACTACTATGAACCAGAGAATGCCTCTCATCTATGTGAAACTGTATACATATCAAgtatgaacttttctattctgtttggaatttagctcatgtgttgttttataacattgtaacaatcgagtttggatatgatgtttag

Basic information

species Glycine max
transcript GLYMA12G15470.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G15470.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0028g01810.t01 (Vitis vinifera), 5'ss of exon 4
AATGGAATATGTTCCCGAATCAATGTACCGAGTTATAAAGCACTACACTACTATGAACCAGAGAATGCCTCTCATCTATGTGAAACTGTATACATATCAAgtatgaacttttctattctgtttggaatttagctcatgtgttgttttataacattg-taacaatcg-agtttggatatgatgtttag----
||||||||||||||| ||  | |||||||| ||  | ||||| || |  | |   |||||||| ||||||||||| ||||| ||||| ||||||||||||||||| | |  | |  | | |   | |||| ||  || | |  |||| |   | |  | ||  |   |||  |   |  ||| |||     
AATGGAATATGTTCCTGAGACTATGTACCGGGTCTTGAAGCATTATAGCAATGCTAACCAGAGGATGCCTCTCATATATGTCAAACTTTATACATATCAAgtatgtaatgattttgtttctccaggattt-gcatatttttccttttttggtactcctgaccctgatagtaagtgaaaaatgcttaatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208291209|gb|GE092863.1|GE092863
EST:     CTATGAACCAGAGAATGCCTCTCATCTATGTGAAACTGTATACATATCAA                         ATCTTTAGGGGATTAGCATATATCCATACCGCACTGGGAGTTTGCCATAGG
genomic: CTATGAACCAGAGAATGCCTCTCATCTATGTGAAACTGTATACATATCAAgtatgaactt ... tgatgtttagATCTTTAGGGGATTAGCATATATCCATACCGCACTGGGAGTTTGCCATAGG
EST: gi|10237492|gb|BE806380.1|BE806380
EST:     CTATGAACCAGAGAATGCCTCTCATCTATGTGAAACTGTATACATATCAA                         ATCTTTAGGGGATTAGCATATATCCATACCGCACTGGGAGTTTGCCATAGG
genomic: CTATGAACCAGAGAATGCCTCTCATCTATGTGAAACTGTATACATATCAAgtatgaactt ... tgatgtttagATCTTTAGGGGATTAGCATATATCCATACCGCACTGGGAGTTTGCCATAGG
EST: gi|208175296|gb|GD975963.1|GD975963
EST:     CTATGTGAAACTGTATACATATCAA                         ATCTTTAGGGGATTAGCATATATCCATACCGCACTGGGAGTTTGCCATAGG
genomic: CTATGTGAAACTGTATACATATCAAgtatgaactt ... tgatgtttagATCTTTAGGGGATTAGCATATATCCATACCGCACTGGGAGTTTGCCATAGG
EST: gi|37994214|gb|CF805960.1|CF805960
EST:     CTATGAACCAGAGAATGCCTCTCATCTATGTGAAACTGTATACATATCAA                         ATCTTTAGGGGATTAGCATATATCCATACCGCACTGGGAGTTTGCCATAGG
genomic: CTATGAACCAGAGAATGCCTCTCATCTATGTGAAACTGTATACATATCAAgtatgaactt ... tgatgtttagATCTTTAGGGGATTAGCATATATCCATACCGCACTGGGAGTTTGCCATAGG
EST: gi|192301989|gb|FG995159.1|FG995159
EST:     CTATGAACCAGAGAATGCCTCTCATCTATGTGAAACTGTATACATATCAA                         ATCTTTAGGGGATTAGCATATATCCATACCGCACTGGGAGTTTGCCATAGG
genomic: CTATGAACCAGAGAATGCCTCTCATCTATGTGAAACTGTATACATATCAAgtatgaactt ... tgatgtttagATCTTTAGGGGATTAGCATATATCCATACCGCACTGGGAGTTTGCCATAGG
EST: gi|193431643|gb|FK395149.1|FK395149
EST:     TGTGAAACTGTATACATATCAA                         ATCTTTAGGGGATTAGCATATATCCATACCGCACTGGGAGTTTGCCATAGG
genomic: TGTGAAACTGTATACATATCAAgtatgaactt ... tgatgtttagATCTTTAGGGGATTAGCATATATCCATACCGCACTGGGAGTTTGCCATAGG
EST: gi|208102284|gb|GD897767.1|GD897767
EST:     CTATGAACCAGAGAATGCCTCTCATCTATGTGAAACTGTATACATATCAA                         ATCTTTAAGGGGAATTAAGCATATAT
genomic: CTATGAACCAGAGAATGCCTCTCATCTATGTGAAACTGTATACATATCAAgtatgaactt ... tgatgtttagATCTTTA-GGGGA-TTA-GCATATAT
EST: gi|207840066|gb|GD810595.1|GD810595
EST:     CTATGAACCAGAGAATGCCTCTCATCTATGTGAAACTGTATACATATCAA                         ATCTTTAGGGGATTAGCATATAT
genomic: CTATGAACCAGAGAATGCCTCTCATCTATGTGAAACTGTATACATATCAAgtatgaactt ... tgatgtttagATCTTTAGGGGATTAGCATATAT
EST: gi|193514122|gb|FK466980.1|FK466980
EST:     GAACCAGAGAATGCCTCTCATCTACGTGAAACTGTATACATATCAA                         ATCTTCAGGGGATTAGCATATATCCATACCGCCCTGCGAGTTTGCCATAGG
genomic: GAACCAGAGAATGCCTCTCATCTATGTGAAACTGTATACATATCAAgtatgaactt ... tgatgtttagATCTTTAGGGGATTAGCATATATCCATACCGCACTGGGAGTTTGCCATAGG
EST: gi|193567659|gb|FK527356.1|FK527356
EST:     CTATGAACCAGAGAATGCCTCTCATCTATGTGAAACTGTATACATATCAA                         ATCTTTAGGGGATTAGCATATATCCATACCGCACTGGGGAGTTTTGCCATA
genomic: CTATGAACCAGAGAATGCCTCTCATCTATGTGAAACTGTATACATATCAAgtatgaactt ... tgatgtttagATCTTTAGGGGATTAGCATATATCCATACCGCACTGGG-AGTTT-GCCATA
EST: gi|22525206|gb|BU084017.1|BU084017
EST:     GTGAAACTGTATACATATCAA                         ATCTTTAGGGGATTAGCATATATCCATACCGCACTGGGAGTTTGCCATAGG
genomic: GTGAAACTGTATACATATCAAgtatgaactt ... tgatgtttagATCTTTAGGGGATTAGCATATATCCATACCGCACTGGGAGTTTGCCATAGG
EST: gi|254341725|gb|GR852862.1|GR852862
EST:     CTATGAACCAGAGAATGCCTCTCATCTATGTGAAACTGTATACATATCAA                         ATCTTTAGGGGATTAGCATATATCCATACCGCACTGGGAGTTTGCCATAGG
genomic: CTATGAACCAGAGAATGCCTCTCATCTATGTGAAACTGTATACATATCAAgtatgaactt ... tgatgtttagATCTTTAGGGGATTAGCATATATCCATACCGCACTGGGAGTTTGCCATAGG
EST: gi|193588938|gb|FK540980.1|FK540980
EST:     CTGTATACATATCAA                         ATCTTTAGGGGATTAGCATATATCCATACCGCACTGGGAGTTTGCCATAGG
genomic: CTGTATACATATCAAgtatgaactt ... tgatgtttagATCTTTAGGGGATTAGCATATATCCATACCGCACTGGGAGTTTGCCATAGG