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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGTGAGGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATCTATTTGCCAACCTTGGTGCTACTGgtacagcaattgaaatatctgatagttatatttatgcttgattattttgtaatgtaaactccattatctgaaatttttttattattttatttgtgtgtatag

Basic information

species Glycine max
transcript GLYMA12G14080.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G14080.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g54910.1 (Oryza sativa), 5'ss of exon 4
TTAGTGAGGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATCTATTTGCCAACCTTGGTGCTACTGgtacagcaattgaaatatctgatagttatatttatgcttgattattttgtaatgtaaactccattatctgaaatttttttattattttatttgtgtgtatag
||   || ||||| ||  ||||||| |||||| ||||||||||||||||||| || ||||||||||| ||| ||          | |||  || ||  ||||      | |   || | | | |   |   | ||| ||| | | |||||||    | ||||         
TTTCGGAAGAGACCTGCAATGAAGTAGAGAGCTTGGTGTTTGATCTATTTGCAAATCTTGGTGCTACAGgtgca----------tttctagtacttcaattt------ggtgccttggaagttttttcataaatatgtgacactattttattcgggt-tttgcag------

upper sequence: GLYMA12G14080.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G128688_T02 (Zea mays), 5'ss of exon 4
TTAGTGAGGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATCTATTTGCCAACCTTGGTGCTACTGgtacagcaattgaaatatctgatagttatatttatgcttgattattttgta-atgtaaactccattatctgaaatttttttattattttatttgtgtgtatag
||  ||| || || || |||||||| |||||| |||| |||||||| ||||| || ||||||||||| |||   |   |       ||   | | | | || |  |||  || |||| |   | | || |   ||   |   |||||                         
TTTCTGAAGAAACCTGCGATGAAGTAGAGAGCTTGGTTTTTGATCTTTTTGCAAATCTTGGTGCTACAGgtcttgtcct--gctcttcaatttggtttcttcaaacttctttcttttctttgtatgaatttgttttgtttggattttgcag---------------------

upper sequence: GLYMA12G14080.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0028g02640.t01 (Vitis vinifera), 5'ss of exon 4
TTAGTGAGGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATCTATTTGCCAACCTTGGTGCTACTGgtacagcaa----ttgaaatatctgatagttatatttatgc--ttgattattttgtaatgtaaactccattatctgaaattt-----------ttttattattttatttgtgtgtatag-----
||| ||||||||  ||||||||||||||||| || || |||||||| ||||| || ||||||||||| ||| ||  ||     ||||||     | ||||  ||  ||     || || |  ||| |  |  |||   |||| ||  | ||           ||| || | |||  |||  |   |       
TTACTGAGGAGAGGTGTGATGAAGTTGAGAGTCTAGTCTTTGATCTTTTTGCAAATCTTGGTGCTACAGgtgcaagaaatatctgaaatgggaaaaagttccatgaatctagctgcttctgctgtgactttcactggtttatttgttagttagatgatcaaatttgataaattttcttgcattcttgtttcag