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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAAATCAGGGATTCAGATGGAAACATATGTCCAAACATCCGAATAGCTGATTGTGGTCACAAAATTGGTTTAAATGGAGTTGATAATGGCCGTATCTGgtaatatatacatttttcaaacaagttgcacttgaaaaatgaatttcctttagataagtaaactcaagttctagccacatgtcttcag

Basic information

species Glycine max
transcript GLYMA12G14060.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G14060.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os06g24704.1 (Oryza sativa), 5'ss of exon 4
CCCAAATCAGGGATTCAGATGGAAACATATGTCCAAACATCCGAATAGCTGATTGTGGTCACAAAATTGGTTTAAATGGAGTTGATAATGGCCGTATCTGgtaa-tatatacatttttcaaacaagttgcacttgaaaaatgaatttcctttagataagtaaactcaagttctagccacatgtcttcag
| || || ||||||  | ||| |||  |    || || ||||  |||||||| ||||| || |||||||| |||||||| ||||||||||| || || |||| |     |  | || |  ||    |||   |   |  | | |  |        ||| | || | || |    | ||           
CTCAGATTAGGGATGAACATGAAAATGTTATGCCTAATATCCAGATAGCTGACTGTGGCCATAAAATTGGATTAAATGGTGTTGATAATGGACGAATTTGgtgagcccttgtacttctgtaaagttttgtcttcctatcacgcacatt------gtaaattaatttaactgtctgtcag----------

upper sequence: GLYMA12G14060.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G06310.1 (Arabidopsis thaliana), 5'ss of exon 4
CCCAAATCAGGGATTCAGATGGAAACATATGTCCAAACATCCGAATAGCTGATTGTGGTCACAAAATTGGTTTAAATGGAGTTGATAATGGCCGTATCTGgtaatatatacatttt----tcaaacaagttgca-cttgaaaaatgaatttcctttagataagtaaactcaagttctagccacatgtcttcag
| |||||||| |||   ||||| |||| |||||| ||| |||| |||||||| ||||| |||||||||||||| ||||| ||||| ||||||||||| |||||||  | |||  ||    | | | |  ||  | |||| | || |  | |    |  ||| | ||  |       |    | |         
CTCAAATCAGAGATCATGATGGCAACACATGTCCTAACGTCCGCATAGCTGACTGTGGACACAAAATTGGTTTGAATGGTGTTGACAATGGCCGTATATGgtaatgcacacaacttaatgttatatagtttttatcttgtacaaagggtgtgtacttcatatggaagattgtaccatgtttatag--------

upper sequence: GLYMA12G14060.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G06290.1 (Arabidopsis thaliana), 5'ss of exon 4
CCCAAATCAGGGATTCAGATGGAAACATATGTCCAAACATCCGAATAGCTGATTGTGGTCACAAAATTGGTTTAAATGGAGTTGATAATGGCCGTATCTGgtaatatatacattt---ttcaaacaagttgcacttgaaa--aatgaatttcctttagataagtaaactcaagttctagccacatgtcttcag
||||||||||||||  |||||| | |||||||||||| ||||| || ||||| ||||| |||||||||||| ||||||| ||||| |||||||| ||||||||  | | |||  |   || |      ||  |  | | |  || | |  | |  | ||  | |  |||    ||  ||              
CCCAAATCAGGGATCAAGATGGCAGCATATGTCCAAATATCCGCATTGCTGACTGTGGACACAAAATTGGTCTAAATGGTGTTGACAATGGCCGGATCTGgtataacacacaactccgtttacttttattttatcttatactaaggtaacttcaatggaagattgcactttgattgcag--------------

upper sequence: GLYMA12G14060.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0028g02660.t01 (Vitis vinifera), 5'ss of exon 4
CCCAAATCAGGGATTCAGATGGAAACATATGTCCAAACATCCGAATAGCTGATTGTGGTCACAAAATTGGTTTAAATGGAGTTGATAATGGCCGTATCTGgtaatatatacatttt------tcaaacaagttg--cacttgaaaaatga------atttcc------tttagataagtaaactcaag---ttctagccacatgtcttcag--
|||| ||||| ||| ||||||| ||||| ||||||||  | ||  |||||||||||||||| ||||||||||||||||| || |||||||| || |||||||||||   ||| |||      | ||||  | ||   | |  | || | |      |||||        | | |||  | |||||| |    || | | | |||| ||     
CCCAGATCAGAGATACAGATGGCAACATTTGTCCAAATGTTCGTGTAGCTGATTGTGGTCATAAAATTGGTTTAAATGGTGTGGATAATGGTCGAATCTGgtaataataacagtttctgtggttaaacttgctgactagtcaataagtcatgattgatttctgtgaatctaaaatatttgaactcaggaggctcaatcaatatgtttttttag

upper sequence: GLYMA12G14060.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S37_122V6.1 (Physcomitrella patens), 5'ss of exon 4
CCCAAATCAGGGATTCAGATGGAAACATATGTCCAAACATCCGAATAGCTGATTGTGGTCACAAAATTGGTTTAAATGGAGTTGATAATGGCCGTATCTGgtaa-tatatacatttttcaa-----acaagttgcact--tgaaaaa----tgaatttcctttagat-aagtaaac--tcaagttcta----gccacatgtcttcag---------------------------
  ||  |  |||||  | ||||  |  |    ||    || || || || ||||||||||||||||||||||| ||||| || || ||||| ||||| |||| | |||  ||  || | |      || |||   | |  ||||| |    || |||   ||| | |  | ||| |  || | |||||    |    ||| | ||                             
GTCAGTTACGGGATCAATATGGCCATGTTATGCCTGGGATACGCATCGCCGATTGTGGTCACAAAATTGGTTTGAATGGCGTGGACAATGGTCGTATTTGgtgagtattaacggttcttagtttgcactagtaaaattggtgaaagaacagtgcattgttttttgctcgaataatcgttctatttctatgaagtattatgccatctcactctaaacaacacaaactgttggtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326408|gb|FK017695.1|FK017695
EST:     GGTCACAAAATTGGTTTAAATGGAGTTGATAATGGCCGTATCTG                         GTTTGATAATGTGAGGATACCCAGAGAGAATTTGTTGAATTCTGTGGCTGA
genomic: GGTCACAAAATTGGTTTAAATGGAGTTGATAATGGCCGTATCTGgtaatatata ... atgtcttcagGTTTGATAATGTGAGGATACCCAGAGAGAATTTGTTGAATTCTGTGGCTGA