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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCCCTTCAAATTCTGTCATAGAAAAAAACCCAGCTTTCTTCAACAAAAGAGATATAGATATTTTAGAGACAATTCCTGGCTTCCCAATGCTTACCAAGgcaagttacatgtttctttcactagttctattatgtgaatatacataggcactttttggacaaatttttcaataagtacatgtaggaaaagaaaattaag...

Basic information

species Glycine max
transcript GLYMA12G09410.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16997091|gb|BM086463.1|BM086463
EST:     GAGATATAGATATTTTAGAGACAATTCCTGGCTTCCCAATGCTTACCAAG                         AACAAATTAAGGGAACAAGTTGTTTTTGACACTCTAAGGGGTGACTGGATG
genomic: GAGATATAGATATTTTAGAGACAATTCCTGGCTTCCCAATGCTTACCAAGgcaagttaca ... ccacttacagAACAAATTAAGGGAACAAGTTGTTTTTGACACTCTAAGGGGTGACTGGATG
EST: gi|26269479|gb|CA820542.1|CA820542
EST:     GATATTTTAGAGACAATTCCTGGCTTCCCAATGCTTACCAAG                         AACAAATTAAGGGAACAAGTTGTTTTTGACACTCTAAGGGGTGACTGGATG
genomic: GATATTTTAGAGACAATTCCTGGCTTCCCAATGCTTACCAAGgcaagttaca ... ccacttacagAACAAATTAAGGGAACAAGTTGTTTTTGACACTCTAAGGGGTGACTGGATG
EST: gi|19345810|gb|BM890690.1|BM890690
EST:     AGATATAGATATTTTAGAGACAATTCCTGCGCTTCCCAATGCTTACCAAG                         AACAAATTAAGGGAACAAGTTGTTTTTGACACTCTAAGGGGTGACTGGATG
genomic: AGATATAGATATTTTAGAGACAATTCCTG-GCTTCCCAATGCTTACCAAGgcaagttaca ... ccacttacagAACAAATTAAGGGAACAAGTTGTTTTTGACACTCTAAGGGGTGACTGGATG