1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGATATTATTCAACGGAAGACAAGGATTAGCCTCCATTTTCATATGAAGAAGGAACAAAGAAAACTTCGCCATGCATTTTCATACAGCTGGCGGTTGTAAgttcttgacttcttgtattgtttgttctttttccaacattaattcataaatgattttccatttttgagttgaaaattatgctcagtatttctcaatcttcaattgcattcttggttttattgtgcattatggtaatttttaacatcgtaagaggtgtgatgctgtgattcag
species | Glycine max |
transcript | GLYMA12G09340.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGGAACAAAGAAAACTTCGCCATGCATTTTCATACAGCTGGCGGTTGT-- G-G-ACATTGCCTGAAATTAGGGATTGCCTAGAAGAGGCTGGATTTCGGTCEST: gi|17021871|gb|BM092905.1|BM092905
genomic: AGGAACAAAGAAAACTTCGCCATGCATTTTCATACAGCTGGCGGTTGTAAgttcttgact ... tgtgattcagGTGGACATTGCCTGAAATTAGGGATTGCCTAGAAGAGGCTGGATTTCGGTC
EST: AGGAACAAAGAAAACTTCGCCATGCATTTTCATACAGCTGGCGGTTGT-- G-G-ACATTGCCTGAAATTAGGGATTGCCTAGAAGAGGCTGGATTTCGGTC
genomic: AGGAACAAAGAAAACTTCGCCATGCATTTTCATACAGCTGGCGGTTGTAAgttcttgact ... tgtgattcagGTGGACATTGCCTGAAATTAGGGATTGCCTAGAAGAGGCTGGATTTCGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATATTATTCAACGGAAGACAAGGATTAGCCTCCATTTTCATATGAAGAAGGAACAAAGAAAACTTCGCCATGCATTTTCATACAGCTGGCGGTTGTAAgttcttgacttcttgtattgtttgttctttttccaacattaattcataaatgattttccatttttgagttgaaaattatgctcagtatttctcaatcttcaattgcattcttggttttattgtgcattatggtaatttttaacatcgtaagaggtgtgatgctgtgattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG