1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGATATTTACAGCTTCGGGGTTGTTCTTTTGGAGCTTATTACAGGCCGGAAAGCCATTGACCATACAAAACCTGCCAAAGAACAAAATCTAGTTGCATGGgtatgtcactactctttacctgtctgttttatttactctggaatccatgattgtttgttgattacttgatttacttttgtagaaactattcttgtcaaat...
species | Glycine max |
transcript | GLYMA12G07870.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGCCATTGACCATAC-AAACCTGCCAAAGAACAAAATCTAGTTGCATGG GCAAGACCCTTGTTCAGAGATAGGAGAAAATTTTCGCAAATGGTTGACCCAEST: gi|207847234|gb|GD818179.1|GD818179
genomic: AAGCCATTGACCATACAAAACCTGCCAAAGAACAAAATCTAGTTGCATGGgtatgtcact ... ttgtttgcagGCAAGACCCTTGTTCAGAGATAGGAGAAAATTTTCGCAAATGGTTGACCCA
EST: AAGCCATTGACCATACAAAACCTGCCAAAGAACAAAATCTAGTTGCATGG GCAAGACCCTTGTTCAGAGATAGGAGAAAATTTTCGCGAATGGTTGACCCAEST: gi|193675120|gb|FK618604.1|FK618604
genomic: AAGCCATTGACCATACAAAACCTGCCAAAGAACAAAATCTAGTTGCATGGgtatgtcact ... ttgtttgcagGCAAGACCCTTGTTCAGAGATAGGAGAAAATTTTCGCAAATGGTTGACCCA
EST: AAGCCATTGACCATACAAAACCTGCCAAAGAACAAAATCTAGTTGCATGG GCAAGACCCTTGTTCAGAGATAGGAGAAAATTTTCGCAAATGGTTGACCCA
genomic: AAGCCATTGACCATACAAAACCTGCCAAAGAACAAAATCTAGTTGCATGGgtatgtcact ... ttgtttgcagGCAAGACCCTTGTTCAGAGATAGGAGAAAATTTTCGCAAATGGTTGACCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATATTTACAGCTTCGGGGTTGTTCTTTTGGAGCTTATTACAGGCCGGAAAGCCATTGACCATACAAAACCTGCCAAAGAACAAAATCTAGTTGCATGGgtatgtcactactctttacctgtctgttttatttactctggaatccatgattgtttgttgattacttgatttacttttgtagaaactattcttgtcaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC