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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTGgtgagtgtaatattcatggtacatatcctgtctcaataaaaacaattttcctgagcctctttccttacatgcatgacag

Basic information

species Glycine max
transcript GLYMA12G07340.4
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07340.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G60550.1 (Arabidopsis thaliana), 5'ss of exon 4
GATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTGgtgagtgtaa----tattcatggtacatatcctgtctcaataaaaacaattttcctgagcctctt---tccttacatgcatgacag---------------------
|||||||||||  ||||||  || ||||||||| |||| | || ||| ||||| || ||||||||||| |||||||| ||||  |    |||| |    | |    |     |  |||    |   | | | ||  |      |  |    | ||| |||                      
GATGAAAATGGTGACAAGACAATCAATGAGTATGTTCGCGTGTGTAAAATTGGATCCGGTAGCTATGGTAAAGTGgtaagtgggaatcttatttactcaatactatccaatcctttaagtgtatcctccataagtattccgggttttggattccataacattatgtttatcattcacaacag

upper sequence: GLYMA12G07340.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G45240.3 (Arabidopsis thaliana), 5'ss of exon 4
GATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTGgtgagtgt-------aatattcatggtacata----tcctgtctcaat-aaaaacaattttcctgagcctcttt-ccttacatgcatgacag
|||||| |||| |||||||  |||||||||| | ||||||||  ||| ||||| |||||||| |||||||||||||| |||||       ||| |  ||| |||||     ||| ||| |  |  | ||||  ||   | ||  |  ||   ||  ||| || ||||
GATGAAGATGGAAACAAGACAATAAATGAGTTTGTTCGTGAGCGTAAAATTGGATCTGGTAGTTATGGGAAAGTGgtaagtgtgaaatcaaatttcaatgttacatggtcttccggtcgctcttgagaacatcttaaataagggttgttgttttgtatgtataacag

upper sequence: GLYMA12G07340.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0004g02990.t01 (Vitis vinifera), 5'ss of exon 4
GATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTGgtgagtgtaatattcatggtacat-atcctgtc-tcaataaaaacaat--tttcctgagcctctttccttacatgcatgacag
|||||||||||||| |||| ||| ||||||||| |||||||||| |||||||||||||| |||||||| |||||||| ||  |  |  |  ||| |  | || || |  |   | |||  |||  |||| | ||| || |  | | ||      ||||
GATGAAAATGGGAATAAGACGATCAATGAGTATGTTCGTGAGTACAAGATTGGTTCTGGAAGCTATGGCAAAGTGgtaagcatggtgctagtggcattttattctttaattgctcaaagaaatggtttctttagcttcctgtcctgcacatgcaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208094328|gb|GD891589.1|GD891589
EST:     ATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTG                         GCTCTTTATCGAGGCTCTGTTGATGACAAGCATTATGCAATTAAG
genomic: ATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTGgtgagtgtaa ... tgcatgacagGCTCTTTATCGAAGCTCTGTTGATGACAAGCATTATGCAATTAAG