Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTAGAAATGCTCGTAAAGCTTGTCCAAATGGCGTTTCTCTTCCTGAATGGATTCTCAAGTCTAGGGAAATAGgtagtgtgttattttaaatcttaaaagttctttcaaatcttcaattgttcaagaatttaatctatagttctgggtcatagtttagtgcaccccctatatgctctatttgtgatctgggtttatttgaaagtgtgtagtaagagttttaatggctcatgtagttgtttcgtcgtttctttttacacttctgcag

Basic information

species Glycine max
transcript GLYMA12G07300.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07300.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0004g02940.t01 (Vitis vinifera), 5'ss of exon 4
ACTAGAAATGCTCGTAAAGCTTGTCCAAATGGCGTTTCTCTTCCTGAATGGATTCTCAAGTCTAGGGAAATAGgtagtgtgttattttaaatcttaaaagttctttcaaatcttcaattgttcaagaatttaatctatagttctgggtcatagtttagtgcaccccctatatgctctatttgtgatctgggtttatttgaaagtgtgtagtaagagttttaatggctcatgtagttgtttcgtcgtttctttttacacttctgcag
||| |||||||||||||||||||||||||||| ||||| || || |||||||||||||| |||||||| |||||| ||||    |  ||  || |  ||   | || |  | ||       ||||  |   ||     | || | ||   || | |||    |    |  ||        |||                                                                                   
ACTCGAAATGCTCGTAAAGCTTGTCCAAATGGTGTTTCACTACCAGAATGGATTCTCAAATCTAGGGAGATAGgtggtgt----tcgtacttcctgtaaagaccttaatgtatt-------tcaaagaagaaa---gaacttttaggaactaatatagcaggctttgtccatttaaatcctgtag---------------------------------------------------------------------------------