1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AATATGTGATCATGTGACTGGGAAATCAAGAGGTTATGGATTTGTGCGGTTCGTTTCTGAAACTACAGCTGCTGCAGCTCGCAAAGAAATGAATGGCCAGgtttttaatttttttagttcccatttttatttaatatgaatttacttttatatatcactgtctttaaaaaatatgcagatttactggctaaaaacttagcttctatttcacccaacattattatatgtggaccttgttccttatcatctcacag
species | Glycine max |
transcript | GLYMA12G07020.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCGTTTCTGAAACTACAGCTGCTGCAGCTCGCAAAGAAATGAATGGCCAG ATACTGGATGGAAGACGCATTCGGGTGAGTTATGCACACAAAAGCGAGCGAEST: gi|192296082|gb|FG989448.1|FG989448
genomic: TCGTTTCTGAAACTACAGCTGCTGCAGCTCGCAAAGAAATGAATGGCCAGgtttttaatt ... catctcacagATACTGGATGGAAGACGCATTCGGGTGAGTTATGCACACAAAGGCGAGCGA
EST: TCGTTTCTGAAACTACAGCTGCTGCAGCTCGCAAAGAAATGAATGGCCAG ATACTGGATGGAAGACGCATTCGGGTGAGTTATGCACACAAAGGCGAGCGAEST: gi|192307333|gb|FK000717.1|FK000717
genomic: TCGTTTCTGAAACTACAGCTGCTGCAGCTCGCAAAGAAATGAATGGCCAGgtttttaatt ... catctcacagATACTGGATGGAAGACGCATTCGGGTGAGTTATGCACACAAAGGCGAGCGA
EST: TCGTTTCTGAAACTACAGCTGCTGCAGCTCGCAAAGAAATGAATGGCCAG ATACTGGATGGAAGACGCATTCGGGTGAGTTATGCACACAAAGGCGAGCGAEST: gi|192310264|gb|FK000716.1|FK000716
genomic: TCGTTTCTGAAACTACAGCTGCTGCAGCTCGCAAAGAAATGAATGGCCAGgtttttaatt ... catctcacagATACTGGATGGAAGACGCATTCGGGTGAGTTATGCACACAAAGGCGAGCGA
EST: TCGTTTCTGAAACTACAGCTGCTGCAGCTCGCAAAGAAATGAATGGCCAG ATACTGGATGGAAGACG
genomic: TCGTTTCTGAAACTACAGCTGCTGCAGCTCGCAAAGAAATGAATGGCCAGgtttttaatt ... catctcacagATACTGGATGGAAGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATATGTGATCATGTGACTGGGAAATCAAGAGGTTATGGATTTGTGCGGTTCGTTTCTGAAACTACAGCTGCTGCAGCTCGCAAAGAAATGAATGGCCAGgtttttaatttttttagttcccatttttatttaatatgaatttacttttatatatcactgtctttaaaaaatatgcagatttactggctaaaaacttagcttctatttcacccaacattattatatgtggaccttgttccttatcatctcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA