Sequence
atgc intronic sequence ATGC exonic sequenceTTGATGGAGTACTCCTACTTGTTAGATCAAGCAGATGAATCAGAGGATCCATACATGCGGTTAGTTTATGCAAgtgagtaattttttccttttttattttctcttttaactcttatttcccaatcacattgaaaagtcgtcctggggatatagttttagataggaatgaatgg...
Basic information
species | Glycine max |
transcript | GLYMA12G06690.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G06690.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 4
TTGATGGAGTACTCCTACTTGTTAGATCAAGCAGATGAATCAGAGGATCCATACATGCGGTTAGTTTATGCAAgtgagtaatttt-ttccttttttattttctcttttaactcttatttcccaatcacattgaaaagtcgtcctggggatatagttttagataggaatgaatgg
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TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCATACATGCGTATGGTTTATGCTTgtgagttttctccttcccttgccttgcacaccgttcggtgccatatcatggttgacttgactgagc-tgttaatcaatttgtttcag--------------
upper sequence: GLYMA12G06690.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G59420.1 (Arabidopsis thaliana), 5'ss of exon 4
TTGATGGAGTACTCCTACTTGTTAGATCAAGCAGATGAATCAGAGGATCCATACATGCGGTTAGTTTATGCAAgtgagtaat--tttttccttttttattttctcttttaactctta--tttcccaatcacat-tgaaaagtcgtcctggggatatagttttagataggaatgaatgg--
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ATAATGGAGTATTCTCATTTGTTGGATCAAGCAGATGAATGCGAAGATCCATACTTGCGTTTAGTATATGCTTgtaagtattagtatttacacacaaaaaactcgtattgacttccgactttgtaagatgtatgttaagagttttacttttcttgtggttgtacgtgaatttttatatag
upper sequence: GLYMA12G06690.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0004g04930.t01 (Vitis vinifera), 5'ss of exon 4
TTGATGGAGTACTCCTACTTGTTAGATCAAGCAGATGAATCAGAGGATCCATACATGCGGTTAGTTTATGCAAgtgagtaattttttccttttttattttctcttttaactcttatttcccaatcacattgaaaagtcgtcctggggatatagttttagataggaatgaatgg
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TTAATGGAATACTCCCACCTGTTAGATAAAGCAGATGAATGCGAGGATCCTTACATGCGATTGGTGTATGCTTgtgagtatattcttgcattaaatatttcagggcatacatgtattatctggtta-atggtggaactttaatgttact--aattgcag--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193682919|gb|FK625067.1|FK625067EST: AGATCAAGCAGATGAATCAGAGGATCCATACATGCGGTTAGTTTATGCAA CATCATGGGCTATATCGGTGTACTTT
genomic: AGATCAAGCAGATGAATCAGAGGATCCATACATGCGGTTAGTTTATGCAAgtgagtaatt ... atcatcacagCATCATGGGCTATATCGGTGTACTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGATGGAGTACTCCTACTTGTTAGATCAAGCAGATGAATCAGAGGATCCATACATGCGGTTAGTTTATGCAAgtgagtaattttttccttttttattttctcttttaactcttatttcccaatcacattgaaaagtcgtcctggggatatagttttagataggaatgaatgg
- - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - GAGGAT