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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGGTGGCCTTGTATTTAGCTCAAGCATTGGAATACTGCAGCAGTAAAGAAAGGGCATTGTACCATGATCTTAATGCATATAGAATTTTGTTTGATCAGgtatttcagcttttaacctgttttgtgcctctttcattgtattttgtcaacttatttggtaccaatggtggacag

Basic information

species Glycine max
transcript GLYMA12G06200.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06200.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0004g05810.t01 (Vitis vinifera), 5'ss of exon 4
GAGGGTGGCCTTGTATTTAGCTCAAGCATTGGAATACTGCAGCAGTAAAGAAAGGGCATTGTACCATGATCTTAATGCATATAGAATTTTGTTTGATCAGgtatttcagc--ttttaacc----tgttttgtgcctctttca--ttgtattttgtcaacttatttggt--accaatggtggacag-----------
||| |||||  | ||||| || ||||| |||||||||||||| |||||||   |||||||||||||||| || ||||| || ||| ||||||||||||||||| ||   |  |||| ||     |||||  || |  |||||  ||||  ||| | |  || ||| ||  ||  |||||| |              
GAGAGTGGCTCTTTATTTGGCACAAGCTTTGGAATACTGCAGTAGTAAAGGGCGGGCATTGTACCATGACCTGAATGCTTACAGAGTTTTGTTTGATCAGgtactttcaccgttttcactgtcatgtttattgaccttttcagtttgttattttttagtttttttagtctactcatggtgaatcaacattttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208336064|gb|GE134205.1|GE134205
EST:     TACCATGATCTTAATGCATATAGAATTTTGTTTGATCAG                         GAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGAT
genomic: TACCATGATCTTAATGCATATAGAATTTTGTTTGATCAGgtatttcagc ... tggtggacagGAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGAT
EST: gi|6566897|gb|AW234529.1|AW234529
EST:     GAATTTTGTTTGATCAG                         GAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGAT
genomic: GAATTTTGTTTGATCAGgtatttcagc ... tggtggacagGAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGAT
EST: gi|193525476|gb|FK478013.1|FK478013
EST:     GAAGGGCATTGTACCATGATCTTAATGCTTATAGAATTTTGTTTGATCAG                         GAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAATAGTAGGGAT
genomic: AAAGGGCATTGTACCATGATCTTAATGCATATAGAATTTTGTTTGATCAGgtatttcagc ... tggtggacagGAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGAT
EST: gi|18730560|gb|BM525946.1|BM525946
EST:     AAAGGGCATTGTACCATGATCTTAATGCATATAGAATTTTGTTTGATCAG                         GAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGAT
genomic: AAAGGGCATTGTACCATGATCTTAATGCATATAGAATTTTGTTTGATCAGgtatttcagc ... tggtggacagGAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGAT