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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATTTTAGAGCTTTGTGTACAGgtacctgtagtctcttcatttcgtttattaatttgatccccatcggtccttgcactgattaggagtgttccacgtgtag

Basic information

species Glycine max
transcript GLYMA12G03540.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213599098|gb|DB958359.1|DB958359
EST:     GAAAATTTTAGAGCTTTGTGTACAG                         GGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtacctgtag ... ccacgtgtagGGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
EST: gi|27424619|gb|CA936139.1|CA936139
EST:     GAAAATTTTAGAGCTTTGTGTACAG                         GGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtacctgtag ... ccacgtgtagGGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
EST: gi|213605371|gb|DB966920.1|DB966920
EST:     GAAAATTTTAGAGCTTTGTGTACAG                         GGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtacctgtag ... ccacgtgtagGGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
EST: gi|151409297|gb|EV279105.1|EV279105
EST:     GAAAATTTTAGAGCTTTGTGTACAG                         GGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtacctgtag ... ccacgtgtagGGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
EST: gi|19452388|gb|BM953798.1|BM953798
EST:     GAAAATTTTAGAGCTTTGTGTACAG                         GGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtacctgtag ... ccacgtgtagGGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
EST: gi|9563823|gb|BE473332.1|BE473332
EST:     GAAAATTTTAGAGCTTTGTGTACAG                         GGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtacctgtag ... ccacgtgtagGGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
EST: gi|213617322|gb|DB965193.1|DB965193
EST:     GAAAATTTTAGAGCTTTGTGTACAG                         GGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCAT
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtacctgtag ... ccacgtgtagGGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAATTTTAGAGCTTTGTGTACAGgtacctgtagtctcttcatttcgtttattaatttgatccccatcggtccttgcactgattaggagtgttccacgtgtag

- - - - AGAGCT
- - - -  GAGCTT