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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTCCTTTCACAACTACAGAATCTGGTCCTTTTTGGGCCTCCTCATGACCACTTACACTGCCTGGTATCTCACAGTTGCCTCTCTCCTTCACGGTCAGgtgacaacaatattcataaattaagttacaaataatttattattattattatttcatacattaaattattaatgatatgaaactgtcattaatatagtagtaatgctatgtttttccaattgttattatgcttag

Basic information

species Glycine max
transcript GLYMA12G03490.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03490.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os10g05690.1 (Oryza sativa), 5'ss of exon 2
TCCTTCCTTTCACAACTACAGAATCTGGTCCTTTTTGGGCCTCCTCATGACCACTTACACTGCCTGGTATCTCACAGTTGCCTCTCTCCTTCACGGTCAGgtgacaacaatattcataaattaagttacaaataatttattattattattatttcatacattaaattattaatgatatgaaactgtcattaatatagtagtaatgctatgtttttccaattgttattatgcttag
 || || || ||||||||| | || ||||||||  | ||||||||||||||||| ||||| ||||||||  || | || ||||| ||| | ||||| ||||| |||   ||||   || || |  ||   |  | |||  || |  | | |     ||   | |  ||  ||  || | | |      ||  ||    | || |                               
CCCGTCATTCCACAACTACCGCATTTGGTCCTTCCTCGGCCTCCTCATGACCACCTACACCGCCTGGTACATCGCCGTCGCCTCCCTCATCCACGGACAGgt-acatatatatct-tacataatattcatagcagttttatagttct-tgaggaggtatcatgatgtaccaaaaatttaatataaaatttggtacctca-tagt-------------------------------

upper sequence: GLYMA12G03490.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G045057_T02 (Zea mays), 5'ss of exon 4
TCCTTCCTTTCACAACTACAGAATCTGGTCCTTTTTGGGCCTCCTCATGACCACTTACACTGCCTGGTATCTCACAGTTGCCTCTCTCCTTCACGGTCAGgtg-aca-acaatattcataaattaagttacaaataatttattattattattatttca-tacattaaattattaatgatatgaaactgtcattaatat-agtagtaatgctatgtttttccaattgttattatgcttag
 || ||||| ||||||||| | |||||||||||  | ||||||||||||||||| ||||| || ||||| |||||  ||||| |  ||   |||||||||||  | |  |  |   | |    || | | ||  || |  |||  |    |  || |  ||  |  |     |  || |||    | ||    || || | | |     | |   | ||  |                 
CCCCTCCTTCCACAACTACCGGATCTGGTCCTTCCTCGGCCTCCTCATGACCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgcgctgagcgtgtgatatgatgcac-tagtcgattgatcgcctgcttgcgctatgtccagcagatcgtg-tatatggccgtaccaaacattaattgatggacgacaatattatag----------------

upper sequence: GLYMA12G03490.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G21050.1 (Arabidopsis thaliana), 5'ss of exon 4
TCCTTCCTTTCACAACTACAGAATCTGGTCCTTTTTGGGCCTCCTCATGACCACTTACACTGCCTGGTATCTCACAGTTGCCTCTCTCCTTCACGGTCAGgtgacaacaatattcataaattaagtta----caaataatttattattattattatttcatacattaaattattaatgatatgaaactgtcattaatatagtagtaatgctatgtttttccaattgttattatgcttag
||||||||| ||||||||||| |||||||| ||| | || ||| | ||||||||||||||||| ||||| |||||  |||||||| |||| || || ||||| || |     ||| | |||  | |||    |||  | || |  ||||  ||   |    |  ||      | |  |   | |||    ||| || | |||                                     
TCCTTCCTTCCACAACTACAGGATCTGGTCTTTTCTTGGACTCTTGATGACCACTTACACTGCTTGGTACCTCACCATTGCCTCTATCCTCCATGGACAGgtaactagttctttctttaatctaattagtttcaacgagttaaagattagaatagctggtgatgttgtggcttaaggggactcaaa--aacatcaacaaagt-------------------------------------

upper sequence: GLYMA12G03490.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0038g02140.t01 (Vitis vinifera), 5'ss of exon 4
TCCTTCCTTTCACAACTACAGAATCTGGTCCTTTTTGGGCCTCCTCATGACCACTTACACTGCCTGGTATCTCACAGTTGCCTCTCTCCTTCACGGTCAGgtgacaacaatat---tcata-aattaagt-tacaaataatttattattattattatttcatacattaaattattaatgatatgaaactgtcattaatatagtagtaatgctatgtttttccaattgttattatgcttag
|||||| || ||||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||| ||||| ||||| || ||||| || || |||||   |   ||||   ||||  ||  || | | ||||  || |  |||||  |||| |  ||   || | ||||| ||    | |     |  |||||   | ||                                   
TCCTTCATTCCACAACTACAGAATCTGGTCCTTCTTGGGCTTGATCATGACCACTTACACTGCCTGGTACCTCACTGTTGCATCCCTCCTCCATGGCCAGgtactatacatatatctcattcaaccaaatatccaaaacatatgatattaaaattagtaaatgattttatttatttatttatttatttatttgttaatg-ggcag-----------------------------------