1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTTTATTGCTGGTGTTGCTGATGACAATGGATATGGATGGGCAATTGCAAAAGCTCTTGCTGCAGCAGGAGCTGAGATCCTTGTTGGCACATGGGTACCTgtaagttatttgtttattttggataaaaaatgggtatctatcagttgatatacgaattcacgaggttctgtctgctgacttttggaacaacacctcccccctccagtgcatatgttttttccagtccttttgtgctgatacatttactaactgtgaaccatttctatag
species | Glycine max |
transcript | GLYMA12G03060.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGCTCTTGCTGCAGCAGGAGCTGAGATCCTTGTTGGCACATGGGTACCT GCCCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACATATCAEST: gi|9899237|gb|BE608135.1|BE608135
genomic: AAGCTCTTGCTGCAGCAGGAGCTGAGATCCTTGTTGGCACATGGGTACCTgtaagttatt ... atttctatagGCCCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACATATCA
EST: AAGCTCTTGCTGCAGCAGGAGCTGAGATCCTTGTTGGCACATGGGTACCT GCCCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACATATCAEST: gi|7692015|gb|AW760131.1|AW760131
genomic: AAGCTCTTGCTGCAGCAGGAGCTGAGATCCTTGTTGGCACATGGGTACCTgtaagttatt ... atttctatagGCCCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACATATCA
EST: AAGCTCTTGCTGCAGCAGGAGCTGAGATCCTTGTTGGCACATGGGTACCT GCCCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACATATCA
genomic: AAGCTCTTGCTGCAGCAGGAGCTGAGATCCTTGTTGGCACATGGGTACCTgtaagttatt ... atttctatagGCCCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACATATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTATTGCTGGTGTTGCTGATGACAATGGATATGGATGGGCAATTGCAAAAGCTCTTGCTGCAGCAGGAGCTGAGATCCTTGTTGGCACATGGGTACCTgtaagttatttgtttattttggataaaaaatgggtatctatcagttgatatacgaattcacgaggttctgtctgctgacttttggaacaacacctcccccctccagtgcatatgttttttccagtccttttgtgctgatacatttactaactgtgaaccatttctatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC