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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTCTCGATTCATTGATGgtacgttgcttcactgattgttctcataatttatcccatttttttttctctgcctgctctaatcctcaaatttgcttttattttatgtacttcag

Basic information

species Glycine max
transcript GLYMA12G01270.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208313371|gb|GE115633.1|GE115633
EST:     GATAAAGGAACTCTCGATTCATTGATG                         TGTGGTACTGATGCTCCAATTAGTGCTGCTCAGATGCTTGCCGAAGTTTGT
genomic: GATAAAGGAACTCTCGATTCATTGATGgtacgttgct ... tgtacttcagTGTGGTACTGATGCTCCAATTAGTGCTGCTCAGATGCTTGCCGAAGTTTGT
EST: gi|298172641|gb|HO019681.1|HO019681
EST:     TAAAGGAACTCTCGATTCATTGATG                         TGTGGTACTGATGCTCCAATTAGTGCTGCTCAGATGCTTGCCGAAGTTTGT
genomic: TAAAGGAACTCTCGATTCATTGATGgtacgttgct ... tgtacttcagTGTGGTACTGATGCTCCAATTAGTGCTGCTCAGATGCTTGCCGAAGTTTGT
EST: gi|15287181|gb|BI471072.1|BI471072
EST:     TAAAGGAACTCTCGATTCATTGATG                         TGTGGTACTGATGCTCCAATTAGTGCTGCTCAGATGCTTGCCGAAGTTTGT
genomic: TAAAGGAACTCTCGATTCATTGATGgtacgttgct ... tgtacttcagTGTGGTACTGATGCTCCAATTAGTGCTGCTCAGATGCTTGCCGAAGTTTGT