1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTCTATTAAGCAAATTCATTCCTACATGGGAGCTGAAGAGGGAGAAGATATTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgataccacattgttggaagtggggtttctgtttcctaactgtcctacatcaatttcagacttgatgtttaacttttattgaatcagacgaagg...
species | Glycine max |
transcript | GLYMA12G00830.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCT GEST: gi|192330860|gb|FK021619.1|FK021619
genomic: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgat ... cactcttcag-
EST: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCT GEST: gi|192330860|gb|FK021619.1|FK021619
genomic: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgat ... cactcttcag-
EST: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCT GEST: gi|192330860|gb|FK021619.1|FK021619
genomic: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgat ... cactcttcag-
EST: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCT GEST: gi|192330860|gb|FK021619.1|FK021619
genomic: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgat ... cactcttcag-
EST: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCT GEST: gi|192330860|gb|FK021619.1|FK021619
genomic: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgat ... cactcttcag-
EST: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCT GEST: gi|151408115|gb|EV277923.1|EV277923
genomic: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgat ... cactcttcag-
EST: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCT TCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACTEST: gi|192324977|gb|FK016133.1|FK016133
genomic: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgat ... cactcttcagTCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACT
EST: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCT GEST: gi|192324977|gb|FK016133.1|FK016133
genomic: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgat ... cactcttcag-
EST: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCT GEST: gi|192324977|gb|FK016133.1|FK016133
genomic: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgat ... cactcttcag-
EST: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCT GEST: gi|192324977|gb|FK016133.1|FK016133
genomic: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgat ... cactcttcag-
EST: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCT GEST: gi|192324977|gb|FK016133.1|FK016133
genomic: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgat ... cactcttcag-
EST: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCT GEST: gi|192324977|gb|FK016133.1|FK016133
genomic: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgat ... cactcttcag-
EST: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCT GEST: gi|19346154|gb|BM891034.1|BM891034
genomic: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgat ... cactcttcag-
EST: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCT TCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACTEST: gi|151404711|gb|EV274525.1|EV274525
genomic: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgat ... cactcttcagTCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACT
EST: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCT TCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACTEST: gi|21887729|gb|BQ740942.1|BQ740942
genomic: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgat ... cactcttcagTCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACT
EST: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCT TCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACT
genomic: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgat ... cactcttcagTCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTATTAAGCAAATTCATTCCTACATGGGAGCTGAAGAGGGAGAAGATATTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgataccacattgttggaagtggggtttctgtttcctaactgtcctacatcaatttcagacttgatgtttaacttttattgaatcagacgaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggggt