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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGAACACTAACAAGTGGATTGAGGAGGTGCGTACAGAACGAGGCAGTGATGTTATTATTGTATTGGTTGGGAATAAAACTGATCTTGTTGAAAAAAGgtgagcaatgagtttgtaaatctggtcaatgaaaatcctttacttaaaggttatattattagtaaaataacaagtttgctaactggatatcttcatcaag...

Basic information

species Glycine max
transcript GLYMA11G38110.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G38110.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 4
TTTTGAACACTAACAAGTGGATTGAGGAGGTGCGTACAGAACGAGGCAGTGATGTTATTATTGTATTGGTTGGGAATAAAACTGATCTTGTTGAAAAAAGgtgagcaatgagtttgtaaatctggtcaatgaaaatcctttacttaaaggttatattattagtaaaataacaagtttgctaactggatatcttcatcaag
| ||||||||   ||||||||||||||| || ||||||||  |||| || ||||| || |||||  ||||||| || ||||| ||||| || || ||||||| || ||  | ||    |   ||    ||| ||  | ||| ||     | |||   | |  | | ||  | | ||||  |                   
TCTTGAACACATCCAAGTGGATTGAGGATGTTCGTACAGAGAGAGGTAGCGATGTCATCATTGTTCTGGTTGGTAACAAAACAGATCTCGTCGACAAAAGgtaagaaac-acttgacgagaatgagacatggaag-ctttttctatttagctatccaact--tgatatttcca-tttgacag------------------

upper sequence: GLYMA11G38110.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0665g00040.t01 (Vitis vinifera), 5'ss of exon 4
TTTTGAACACTAACAAGTGGATTGAGGAGGTGCGTACAGAACGAGGCAGTGATGTTATTATTGTATTGGTTGGGAATAAAACTGATCTTGTTGAAAAAAGgtgagcaatgagtttgtaaatctggtcaatgaaaatcctttacttaaaggttatattattagtaaaataacaagtttgctaactggatatcttcatcaag--
|| |||||||   ||||||||||||||| ||||||||||||||||||| |||||| ||||||||  | |||||||||||||| ||||||||||| ||||||| |    |    |  | | | || |  |   || |||    ||      |   | |     |  |   |    ||| ||  ||    || || |       
TTCTGAACACGTCCAAGTGGATTGAGGAAGTGCGTACAGAACGAGGCACTGATGTCATTATTGTTCTTGTTGGGAATAAAACCGATCTTGTTGATAAAAGgttatatttatactcattactgtgttggac--aattccaagtctggtgaatctcagttacttttgacccatggctttcctttctctcaattttaactgccaa