Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGATTATACGGGAGGCATCTCCATGTATATAGCTGGCCTGGGGGCGAACTGAGACAAACACTGGACCTTGGTGATTCAGGGCTTTTACCCTTAGAGgcaagttgttaacataatccagggagatgtttagaatgcattaattttattcttttaactttgtgtatttgaagcctgtttattacccctgtgatttaactatgactgtactaagtacttccccctttcctctcgcttgtagtaattgtgaaccaatttgcaaaattgccatattataactaatgtaccctaaatgcag

Basic information

species Glycine max
transcript GLYMA11G36670.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G36670.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0029g00240.t01 (Vitis vinifera), 5'ss of exon 4
TGATGGATTATACGGGAGGCATCTCCATGTATATAGCTGGCCTGGGGGCGAACTGAGACAAACACTGGACCTTGGTGATTCAGGGCTTTTACCCTTAGAGgcaagttgtt--aacataatccagggagatgtttagaatgcattaattttattcttttaactttgtgtatttgaagcctgtttattacccctgtgatttaactatgactgtactaagtacttccccctttcctctcgcttgtagtaattgtgaaccaatttgcaaaattgccatattataactaatgtaccctaaatgcag
 |||||  |||| |||| ||||||  |||| |||  |||||||| ||| ||||||| ||||||| |||| |||||||||||||| || |||||||||||||  |||| |   || ||||||||             | ||| ||  |||| |  ||   |  | |   ||   |    | ||| |      |   || | | ||||||  ||    ||  |  |   || |      | ||| |||  |   | |    ||||    ||||                              
AGATGGTCTATATGGGAAGCATCTATATGTGTATTCCTGGCCTGAGGGTGAACTGAAACAAACATTGGATCTTGGTGATTCAGGACTCTTACCCTTAGAGgtgagttttggaaatataatccacc-----------attgctttgctttt-tggttaagaaatagcaaatgctacatttttttctctaattttgcatgttattatgaccatat---gtgttaacggtttactatctacatgt-gtatcttcaatctttcttgc----ttgcag----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814252|gb|BI786527.1|BI786527
EST:     AACTGAGACAAACACTGGACCTTGGTGATTCANGGCTTTTACCCTTAGAG                         ATAAGGTTCTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGGAGTGCA
genomic: AACTGAGACAAACACTGGACCTTGGTGATTCAGGGCTTTTACCCTTAGAGgcaagttgtt ... ctaaatgcagATAAGGTTCTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGGAGTGCA
EST: gi|18726732|gb|BM523722.1|BM523722
EST:     AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAG                         ATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
genomic: AACTGAGACAAACACTGGACCTTGGTGATTCAGGGCTTTTACCCTTAGAGgcaagttgtt ... ctaaatgcagATAAGGTTCTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGGAGTGCA
EST: gi|21887640|gb|BQ740853.1|BQ740853
EST:     AACTGAGACAAACACTGGACCTTGGTGATTCAGGGCTTTTACCCTTAGAG                         ATAAGGTTCTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGGAGTGCA
genomic: AACTGAGACAAACACTGGACCTTGGTGATTCAGGGCTTTTACCCTTAGAGgcaagttgtt ... ctaaatgcagATAAGGTTCTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGGAGTGCA