1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGTGAAGAATATTAGAAGACGAATGACCCCCCAACCCTTGAAAATTAGGGCAGATATTGAAATGAAATGTTTTCAATTTGATGGAGTTCTTCACATTAAGgtcttgattatttctattcctcctgtttcttattttggcttcttttcttttaagcatctaatttgttatgtgaagtgttatttcctatagcttatcttccaaagtattctcacgttttataatgatttgattatgcag
species | Glycine max |
transcript | GLYMA11G35600.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAGATATTGAAATGAAATGTTTTCAATTTGATGGAGTTCTTCACATTAAG GAGGCAATGCATAAGGCTGAAGCTGCAGGAAATGATGACTGCCCCGTCAAAEST: gi|254322253|gb|GR837667.1|GR837667
genomic: CAGATATTGAAATGAAATGTTTTCAATTTGATGGAGTTCTTCACATTAAGgtcttgatta ... gattatgcagGAGGCAATGCATAAGGCTGAAGCTGCAGGAAATGATGACTGCCCCGTCAAA
EST: CAGATATTGAAATGAAATGTTTTCAATTTGATGGAGTTCTTCACATTAAG GAGGCAATGCATAAGGCTGAAGCTGCAGGAAATGATGACTGCCCCGTCAAAEST: gi|254323855|gb|GR840388.1|GR840388
genomic: CAGATATTGAAATGAAATGTTTTCAATTTGATGGAGTTCTTCACATTAAGgtcttgatta ... gattatgcagGAGGCAATGCATAAGGCTGAAGCTGCAGGAAATGATGACTGCCCCGTCAAA
EST: CAGATATTGAAATGAAATGTTTTCAATTTGATGGAGTTCTTCACATTAAG GAGGCAATGCATAAGGCTGAAGCTGCAGGAAATGATGACTGCCCCGTCAAAEST: gi|151396190|gb|EV266067.1|EV266067
genomic: CAGATATTGAAATGAAATGTTTTCAATTTGATGGAGTTCTTCACATTAAGgtcttgatta ... gattatgcagGAGGCAATGCATAAGGCTGAAGCTGCAGGAAATGATGACTGCCCCGTCAAA
EST: CAGATATTGAAATGAAATGTTTTCAATTTGATGGAGTTCTTCACATTAAA GAGGCAATGCATAAAGCTGAEST: gi|193510713|gb|FK467211.1|FK467211
genomic: CAGATATTGAAATGAAATGTTTTCAATTTGATGGAGTTCTTCACATTAAGgtcttgatta ... gattatgcagGAGGCAATGCATAAGGCTGA
EST: CAGATATTGAAATGAAATGTTTTCAATTTGATGGAGTTCTTCACATTAAG GAGGCAATGCATAAGGCTGAAGCTGCAGGAAATGATGACTGCCCCGTNAAA
genomic: CAGATATTGAAATGAAATGTTTTCAATTTGATGGAGTTCTTCACATTAAGgtcttgatta ... gattatgcagGAGGCAATGCATAAGGCTGAAGCTGCAGGAAATGATGACTGCCCCGTCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGAAGAATATTAGAAGACGAATGACCCCCCAACCCTTGAAAATTAGGGCAGATATTGAAATGAAATGTTTTCAATTTGATGGAGTTCTTCACATTAAGgtcttgattatttctattcctcctgtttcttattttggcttcttttcttttaagcatctaatttgttatgtgaagtgttatttcctatagcttatcttccaaagtattctcacgttttataatgatttgattatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA