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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTGAAGAAGCTAGCTAAAAAATACCATGCTTTTTTAGCATCTGAAGCAGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattgccgtagttatgtttttctggtttaggattttgatcttttttggacaaatgatgttttttggtgatttgctttattttttttaatcattat...

Basic information

species Glycine max
transcript GLYMA11G35450.4
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G35450.2 (Glycine max), 5'ss of exon 4
lower sequence: AT2G27530.1 (Arabidopsis thaliana), 5'ss of exon 4
TTGGTGAAGAAGCTAGCTAAAAAATACCATGCTTTTTTAGCATCTGAAGCAGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattgccg-tagttatgtttttc----tggtttaggattttgatctt-ttttggacaaatgatgttttttggtgatttgctttattttttttaatcattat
 | || |||||||| |||||    ||||||||||| || || |||||  | |||||||||||||||||||||||| | ||||||||||| ||||| ||||||  || |   |  ||  | || |  |     |  | || | |  | || |  ||| |     | | | | | |  | | |||    |  |||  || || |  | 
CTTGTTAAGAAGCTTGCTAAGTCTTACCATGCTTTCTTGGCTTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcgagtttcttcaataactttgatacttggtatattatatggtcatcatttagtttcgttttcaagctctatgtctgaggtttctacttgtttgattgatgaacag

upper sequence: GLYMA11G35450.2 (Glycine max), 5'ss of exon 4
lower sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 4
TTGGTGAAGAAGCTAGCTAAAAAATACCATGCTTTTTTAGCATCTGAAGCAGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg-ccgtagttatgtttttctggtttaggattttgatcttttttggacaaatgatgttttttggtgatttgctttattttttttaatcattat-----------------------------------------------------------------------------------
 | || |||||||| || || |||||||||||||| || || |||||  | |||||||||||||||||||||||| | ||||||||||| ||||| ||||||| ||  || |   || ||   ||   | |||     |||  |||  ||||| |     |||   |||| ||  | |  ||  ||| |     || || |                                                                                   
CTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCCTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctggctacagctaatattccattgttcttc-tttacatccgttttg-attttggataggttttagtagtctatttcttttgtcaatgtctttttgatacaatgccaatcctttatcctgtgagattatgcttctttgatgattcttaagtaacattcctttgctttactttacacag

upper sequence: GLYMA11G35450.2 (Glycine max), 5'ss of exon 4
lower sequence: AT5G22440.1 (Arabidopsis thaliana), 5'ss of exon 4
TTGGTGAAGAAGCTAGCTAAAAAATACCATGCTTTTTTAGCATCTGAAGCAGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattgccgtagttatgtttttctggtttaggattttg-atcttttttggacaaatgatgttttttggtgatttgctttattttttttaatcattat
 | || |||||||| ||||| |||| |||||||||  | || |||||| | |||||||||||||||||||||||| | ||||||||||||||||| |||||||||| |  |     |||  |  |  | |  || | | ||| ||| | | |    | |||||| |   |      |||  |  || |    ||| |  | 
CTTGTTAAGAAGCTTGCTAAGAAATTCCATGCTTTCCTTGCTTCTGAATCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTCAACAAGGCAGgcatgtct--ctaaccttacctaatctttgcatatgttcttgtatcctctct----atatgatgctacattaaatcttgactc-ttatgaacaatgaacag

upper sequence: GLYMA11G35450.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0080g00400.t01 (Vitis vinifera), 5'ss of exon 6
TTGGTGAAGAAGCTAGCTAAAAAATACCATGCTTTTTTAGCATCTGAAGCAGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattgc-cgtagttatgtt-tttctggtttaggattttgatcttttttggacaaatgatgttttttggtgattt---gctttattttttttaatcattat
    | ||||| || || || ||||||||||| ||||||||||| || || || ||||||||||| || |||||||| || ||||| |||||||| ||||||| ||||  |   |  |||||     | | |||    | | | |  |    |  | |   |   || |||||| || |      | || | | |  |  | || 
----TCAAGAAACTTGCCAAGAAATACCATGCCTTTTTAGCATCAGAGGCTGTTATTAAGCAGATCCCCCGTCTTTTAGGCCCTGGGCTCAACAAGGCAGGCAAgtatatcatatgattatggcacctgttgttagttactataacttgcaattaatatgagcgcttatttggtcatgttagatatgatgtatgtggaggacta-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213590596|gb|DB968132.1|DB968132
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|192305923|gb|FG995795.1|FG995795
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|58017635|gb|CX704377.1|CX704377
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|15814633|gb|BI786908.1|BI786908
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|151398425|gb|EV268296.1|EV268296
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|192305924|gb|FG995796.1|FG995796
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|192307782|gb|FG999261.1|FG999261
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|18848831|gb|BM567943.1|BM567943
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|214004726|gb|DB985379.1|DB985379
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|151400505|gb|EV270319.1|EV270319
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|151400830|gb|EV270644.1|EV270644
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|58014260|gb|CX701002.1|CX701002
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|193483285|gb|FK448524.1|FK448524
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTT
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTT
EST: gi|308099186|gb|HO761027.1|HO761027
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|24136884|gb|BU927394.1|BU927394
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|151393924|gb|EV263795.1|EV263795
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|12773606|gb|BG238533.1|BG238533
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|298185503|gb|HO030716.1|HO030716
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|298190383|gb|HO032504.1|HO032504
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|17400125|gb|BM176907.1|BM176907
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|209723425|gb|BW651353.1|BW651353
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|27423697|gb|CA935217.1|CA935217
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAA
EST: gi|298163950|gb|HO013595.1|HO013595
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|298188041|gb|HO031998.1|HO031998
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|254316553|gb|GR828090.1|GR828090
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|16996638|gb|BM086010.1|BM086010
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|298180009|gb|HO025224.1|HO025224
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAATAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|298165591|gb|HO011640.1|HO011640
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|192296219|gb|FG989760.1|FG989760
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|7284321|gb|AW596915.1|AW596915
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|15287229|gb|BI471120.1|BI471120
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|15286513|gb|BI470404.1|BI470404
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|23725677|gb|BU760801.1|BU760801
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|209699176|gb|BW664353.1|BW664353
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|24136835|gb|BU927345.1|BU927345
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCGGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|254316554|gb|GR828091.1|GR828091
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|213619878|gb|DB971137.1|DB971137
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|6566570|gb|AW234213.1|AW234213
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTC
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTC
EST: gi|11687786|gb|BF595462.1|BF595462
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|13481097|gb|BG510440.1|BG510440
EST:     GATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAATCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: GATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|209701422|gb|BW667323.1|BW667323
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|16348580|gb|BI974175.1|BI974175
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCAC
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCAC
EST: gi|298177490|gb|HO023623.1|HO023623
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|209701463|gb|BW667324.1|BW667324
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: gi|17023216|gb|BM094250.1|BM094250
EST:     AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAG                         GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGGTGAAGAAGCTAGCTAAAAAATACCATGCTTTTTTAGCATCTGAAGCAGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattgccgtagttatgtttttctggtttaggattttgatcttttttggacaaatgatgttttttggtgatttgctttattttttttaatcattat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT