Sequence
atgc intronic sequence ATGC exonic sequenceGTTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGCAGTGCAGGATCTCCTCCAGATATTCCTCCAGAgtactattctcatgccacaattatttgtttggaaacataattatgaagcaaaaatgttcaaaaataacctgggatacaaattctactagtgttctaatta...
Basic information
species | Glycine max |
transcript | GLYMA11G34120.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G34120.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g38370.2 (Oryza sativa), 5'ss of exon 4
GTTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGCAGTGCAGGATCTCCTCCAGATATTCCTCCAGAgtactattctcatgccacaattatttgtttggaaacataattatgaagcaaaaatgttcaaaaataacctgggatacaaattctactagtgttctaatta
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GTTGGTGAAGTTGCAAAAATAACATGCAAGCCAGAATACGCATACGGAAGTGCAGGGTCGCCGCCAGAGATTCCACCCAAgt-ctgttgctatttctc--ctatgcgat-gcaaatttgagttcctggtgtctataattgaat-cagctttgtctttgcag-------------------
upper sequence: GLYMA11G34120.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g62610.1 (Oryza sativa), 5'ss of exon 6
GTTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGCAGTGCAGGATCTCCTCCAGATATTCCTCCAGAgtactattctcatgccacaattatttgtttggaaa---cataattatgaagcaaa-aatgttcaaaaataacctgggatacaaattctactagtgttctaatta
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GTTGGAGAGGTTGCAAAGATCACATGCAAGCCAGAATATGCTTATGGAGCTGCAGGTTCACCTCCAGAGATACCGCCAGAgta--agtctgaaaacttgatctgtcactagtaaagtctttggtttttttatgtacagagttcaaaggtaac---agaaacag-ctctgtttttttttccacag
upper sequence: GLYMA11G34120.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G55520.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGCAGTGCAGGATCTCCTCCAGATATTCCTCCAGAgtactattctcatgccacaattatttgtttggaaacataattatgaagcaaaaatgttcaaaaataacctgggatacaaattctactagtgttctaatta
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GTTGGAGAAGTTGCAAAAATTACATGTAAGCCAGAATATGCTTACGGAAGAGCCGGGTCTCCTCCCGACATCCCACCTGAgta-tgttat-gttccaaacttcttgcatctcgttcaagggagtgtgacagttttttttttgttt---ttgtaattgagatttt--tggtaattgcag--
upper sequence: GLYMA11G34120.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0019g01900.t01 (Vitis vinifera), 5'ss of exon 4
GTTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGCAGTGCAGGATCTCCTCCAGATATTCCTCCAGAgtactattctcatgccacaattatttgtt----tggaaacataattatgaagcaaaaat---gttcaaaaataacctgggatacaaattctactagtgttctaatta
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GTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCTGCTGGTTCTCCACCAGATATCCCTGCAGAgtaatatttttactatcctgtctcctgtcattgttagaacacaagccaaatttaattattctgtttaagtagaag-taaaacataagatgcccaagcattg------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208202125|gb|GD998728.1|GD998728EST: CCAGAATATGCATATGGCAGTGCAGGATCTCCTCCAGATATTCCTCCAGA CGCACAACTTGTTTTTGAAGTTGAGCTTGTTGCTTGTCGGCCAAGGAAGGG
genomic: CCAGAATATGCATATGGCAGTGCAGGATCTCCTCCAGATATTCCTCCAGAgtactattct ... ttctttgcagCGCACAACTTGTTTTTGAAGTTGAGCTTGTTGCTTGTCGGCCAAGGAAGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGCAGTGCAGGATCTCCTCCAGATATTCCTCCAGAgtactattctcatgccacaattatttgtttggaaacataattatgaagcaaaaatgttcaaaaataacctgggatacaaattctactagtgttctaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaataa