1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGTAGTGAGAGTGTGTCCAATTCACCACAGAAAGGGATGGATGGAGACAAGCCTAGCTCATCTGCAAAATTGCATGTACCTAAGGCTAAGGATTCTCATGgtaactaattccctgatattcattcattcggcttgtcttgattgttcattacacttgatagtaacatatttgctctgtataccttgtgaacag
species | Glycine max |
transcript | GLYMA11G34050.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCCTAGCTCATCTGCAAA-TTGCATGTACCTAAGGCTAAGGATTCTCATG TAAAGTTTAGCATAAAGTCEST: gi|6725557|gb|AW309956.1|AW309956
genomic: GCCTAGCTCATCTGCAAAATTGCATGTACCTAAGGCTAAGGATTCTCATGgtaactaatt ... ttgtgaacagTAAAGTTTAGCATAAAGTC
EST: GCCTAGCTCATCTGCAAAATTGCATGTACCTAAGGCTAAGGATTCTCATG TAAAGTTTAGCATACAGTCAATAAGGATTCCAGAGCTTTATATTGAGGGTCEST: gi|9258784|gb|BE346931.1|BE346931
genomic: GCCTAGCTCATCTGCAAAATTGCATGTACCTAAGGCTAAGGATTCTCATGgtaactaatt ... ttgtgaacagTAAAGTTTAGCATAAAGTCAATAAGGATTCCAGAGCTTTATATTGAGGTTC
EST: CCTAAGGCTAAGGATTCTCATG TAAAGTTTAGCATAAAGTCAATAAGGATTCCAGAGCTTTATATTGAGGTTCEST: gi|192323863|gb|FK018614.1|FK018614
genomic: CCTAAGGCTAAGGATTCTCATGgtaactaatt ... ttgtgaacagTAAAGTTTAGCATAAAGTCAATAAGGATTCCAGAGCTTTATATTGAGGTTC
EST: GCCTAGCTCATCTGCAAAATTGCATGTACCTAAGGCTAAGGATTCTCATG TAAAGTTTAGCATAAAGTCAATAAGGATTCCAGAGCTTTATATTGAGGTTC
genomic: GCCTAGCTCATCTGCAAAATTGCATGTACCTAAGGCTAAGGATTCTCATGgtaactaatt ... ttgtgaacagTAAAGTTTAGCATAAAGTCAATAAGGATTCCAGAGCTTTATATTGAGGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTAGTGAGAGTGTGTCCAATTCACCACAGAAAGGGATGGATGGAGACAAGCCTAGCTCATCTGCAAAATTGCATGTACCTAAGGCTAAGGATTCTCATGgtaactaattccctgatattcattcattcggcttgtcttgattgttcattacacttgatagtaacatatttgctctgtataccttgtgaacag
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