1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AACATTTATTGGTTTTCTCAAGAGCAAGGATCCCAATGATGGAACAGAACAAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatttttctgcttttctctctctgctatttgtttgcaatcttgattaggtttttgatttagttatggaatttcagccacagaagaaatgcaatg...
species | Glycine max |
transcript | GLYMA11G33700.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGAEST: gi|209722386|gb|BW665859.1|BW665859
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGAEST: gi|193679587|gb|FK622737.1|FK622737
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGAEST: gi|31470635|gb|CD412663.1|CD412663
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGAAATCTGCAGCTGACCTATCACTTGGAEST: gi|7147501|gb|AW509423.1|AW509423
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGCAAAT GGTCCTTTCATCAACCGTAGTGAGATATCTGCAGCTGACCTATCACTTGGAEST: gi|151403447|gb|EV273257.1|EV273257
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGAEST: gi|192299879|gb|FG990087.1|FG990087
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGAEST: gi|120534693|gb|EH262826.1|EH262826
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGAEST: gi|298165886|gb|HO008857.1|HO008857
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACEST: gi|120534677|gb|EH262810.1|EH262810
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCAC
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATTTGCAGCTGACCTATCACTTGGAEST: gi|209722400|gb|BW665860.1|BW665860
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGAEST: gi|10233723|gb|BE802611.1|BE802611
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGAEST: gi|12691145|gb|BG157481.1|BG157481
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGAEST: gi|209708273|gb|BW678645.1|BW678645
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: ATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGAEST: gi|193622016|gb|FK569560.1|FK569560
genomic: ATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: GCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATACAAAGGAAAAT GGTCCTTTCATEST: gi|20813171|gb|BQ297649.1|BQ297649
genomic: GCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACAT-CAA-GGAAAATgtatgacatt ... ctctttatagGGTCCTTTCAT
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGAEST: gi|5677088|gb|AI938218.1|AI938218
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGAEST: gi|209705735|gb|BW661403.1|BW661403
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACATTTATTGGTTTTCTCAAGAGCAAGGATCCCAATGATGGAACAGAACAAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatttttctgcttttctctctctgctatttgtttgcaatcttgattaggtttttgatttagttatggaatttcagccacagaagaaatgcaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA