Sequence
atgc intronic sequence ATGC exonic sequenceTCCCGTTGATGGAAGATTTGAGCATATAGTCTTGTCCTGTAATGCAACATCAGATCATGGAATTATTTGGATTGAAAGGGAAGCTGAGAAAGCTTTACAAgtaaggaaatatctaccatttgattttgtaatccaaactaggaacataaaaaccctaagtatatacaccaaaaaaaaagaactaggaatagaaaaaacttgttacaatgtaatttatggatcaaagttctgttgaagttttctctgcatgtaacgaatttctgactgttgttggtattcccttttag
Basic information
species | Glycine max |
transcript | GLYMA11G33660.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G33660.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G37710.1 (Arabidopsis thaliana), 5'ss of exon 4
TCCCGTTGATGGAAGATTTGAGCATATAGTCTTGTCCTGTAATGCAACATCAGATCATGGAATTATTTGGATTGAAAGGGAAGCTGAGAAAGCTTTACAAgtaagga--aatatctaccatttgattttgtaatccaa--actaggaacataaa---aaccctaagtatatacaccaaaaaaaaagaactaggaatagaaaaaacttgttacaatgtaatttatggatcaaagttctgttgaagttttctctgcatgtaacgaatttctgactgttgttggtattcccttttag
|||||||||||| ||||||||||||||||| || || | ||||||||||| ||||||| ||| | ||||| ||||| ||||| || || || || || || | ||| ||| | ||| || || || ||| |||| | | | | ||| |||| | || || | |||| | |
TCCCGTTGATGGTAGATTTGAGCATATAGTATTATCATCGAATGCAACATCGGATCATGCGATTCTATGGATAGAAAGAGAAGCAGAAAAGGCATTGCAGgtgacatttaatttctgcatttttatgttttagatcaatggttagggctaaggatttaggatttagtttataaggcttaagtaaggttacaggatttaag----------------------------------------------------------------------------------------------
upper sequence: GLYMA11G33660.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0006g01030.t01 (Vitis vinifera), 5'ss of exon 4
TCCCGTTGATGGAAGATTTGAGCATATAGTCTTGTCCTGTAATGCAACATCAGATCATGGAATTATTTGGATTGAAAGGGAAGCTGAGAAAGCTTTACAAgtaaggaaatatctaccatttgattttgtaatccaaactaggaacataaaaac-cctaagtatataca-ccaaaaaaaaagaactaggaatagaaaaaacttgttacaatgtaatttatggatcaaagttctgttgaagttttctctgcatgtaacgaatttctgactgttgttggtattcccttttag
||| ||||||||||| |||||||| || || || || || ||||| ||||| |||||||||||||| ||||||||||| ||||| || || |||||||||||||| | | | || || | || ||||||| | | | ||||||| | || | | | || | ||| | || |
TCCTGTTGATGGAAGGTTTGAGCAAATCGTTTTATCATGCAATGCCACATCTGATCATGGAATTATCTGGATTGAAAGAGAAGCAGATAAGGCTTTACAAgtaagtggagagaaatt-ttgtatcctactattgaaactagatgctttttcattcctaagttttctcagtttctccagatgtgctgttattaggcta--ctag--------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51335105|gb|CO978971.1|CO978971EST: CAGATCATGGAATTATTTGGATTGAAAGGGAAGCTGAGAAAGCTTTACAA TTAATGAAGGCTCAGAGCTCTGAAACTGTGACAGACCCTCCAACTGTACAA
genomic: CAGATCATGGAATTATTTGGATTGAAAGGGAAGCTGAGAAAGCTTTACAAgtaaggaaat ... tcccttttagTTAATGAAGGCTCAGAGCTCTGAAACTGTGACAGACCCTCCAACTGTACAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCCGTTGATGGAAGATTTGAGCATATAGTCTTGTCCTGTAATGCAACATCAGATCATGGAATTATTTGGATTGAAAGGGAAGCTGAGAAAGCTTTACAAgtaaggaaatatctaccatttgattttgtaatccaaactaggaacataaaaaccctaagtatatacaccaaaaaaaaagaactaggaatagaaaaaacttgttacaatgtaatttatggatcaaagttctgttgaagttttctctgcatgtaacgaatttctgactgttgttggtattcccttttag
- - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA