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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGTAAATACTAATGCTGATTTCAGATCAGGATATATTATGAATACTAGCATTGCTGGTCTTGAAAAAGCGGATGCGTTCCTGTTGGTTGGCACCCAGgtatatctcttatctctctaatgtattttaataatatgcatgttttttaatgttacagatggtcaaatgattcctgtgttagactaaataatttttttaa...

Basic information

species Glycine max
transcript GLYMA11G33480.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G33480.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g50540.1 (Oryza sativa), 5'ss of exon 4
TGGTGTAAATACTAATGCTGATTTCAGATCAGGATATATTATGAATACTAGCATTGCTGGTCTTGAAAAAGCGGATGCGTTCCTGTTGGTTGGCACCCAGgtatatctct-----tatctctctaatgtattttaat-aatatgcatgttttttaatgttacagatggtcaaatgattcctgtgttagactaaataatttttttaa
||||  || | ||  ||| ||| |  | ||    ||  | |||||||||||||||||||| ||||| ||||| ||||  ||||| |||||||| || |||||| |    |     || ||  |   ||  | ||| | | |    || ||| || |  |      |  || ||  | | ||||||   | |  ||    |      
TGGTCCAAGTCCTCCTGCGGATCTACGTTCTAACTACCTAATGAATACTAGCATTGCTGGGCTTGAGAAAGCTGATGTCTTCCTTTTGGTTGGTACACAGgtaaaatcttgactataccttacctgtggctattatttactgccaatttttcttgaattcttcacttctccaagaaatgctgtgt--aattgcattgcctca----

upper sequence: GLYMA11G33480.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G126038_T01 (Zea mays), 5'ss of exon 4
TGGTGTAAATACTAATGCTGATTTCAGATCAGGATATATTATGAATACTAGCATTGCTGGTCTTGAAAAAGCGGATGCGTTCCTGTTGGTTGGCACCCAGgtatatctcttatc--tctctaatgtattttaataatatgcatgttttttaatgttacagatggtcaaatgattcctgtgttagactaaataatttttttaa
||||   ||| ||   || ||  |  ||||    ||  | |||||||| ||||||||||| |||||||| || |||| |||||| ||||||||||| |||||| ||  ||  ||  |  ||| ||   |||  |    |||   ||   |  | | | | ||      ||   |  |    || |     |  |  |   | 
TGGTCCCAATCCTCCAGCAGACCTGCGATCTAACTACCTAATGAATACCAGCATTGCTGGGCTTGAAAAGGCTGATGTGTTCCTTTTGGTTGGCACTCAGgtaaattactcctcaatgcctagtgccattttcttggttgctacttgcattctctgaaatataccattatatataat-cactatatcttgtgctggtggca-

upper sequence: GLYMA11G33480.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G145854_T01 (Zea mays), 5'ss of exon 4
TGGTGTAAATACTAATGCTGATTTCAGATCAGGATATATTATGAATACTAGCATTGCTGGTCTTGAAAAAGCGGATGCGTTCCTGTTGGTTGGCACCCAGgtatatctcttatctct--ctaatgtattttaataatatgcatgttttttaatgtta-cagatggtcaaatgattcctgtgttagactaaataatttttttaa
||||   ||| ||   || ||| |  ||||    ||  | |||||||| ||||||||||| |||||||| || ||||  ||||| ||||||||||| |||||| |  || | ||| |  ||| ||    ||  |    ||| | ||   | || | |  | |   | | ||  |        | ||     |  | ||     
TGGTCCTAATCCTCCAGCAGATCTGCGATCTAACTACCTAATGAATACGAGCATTGCTGGGCTTGAAAAGGCTGATGTCTTCCTTTTGGTTGGCACTCAGgtaaaattcatctctgtgcctagtgccactttctttcttgcttcttgcattatctgaatataccattatattgtataatcactggatcttgtgctgttgg---

upper sequence: GLYMA11G33480.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0006g02020.t01 (Vitis vinifera), 5'ss of exon 4
TGGTGTAAATACTAATGCTGATTTCAGATCAGGATATATTATGAATACTAGCATTGCTGGTCTTGAAAAAGCGGATGCGTTCCTGTTGGTTGGCACCCAGgtatatctcttatctctctaatgtattttaa---taata-tgcatgttttttaatgttacagatggtcaaatgattcctgtgttagactaaataatttttttaa
|||   | || |   ||||||| |  | ||||||||| |  ||||||  | ||||||||| |||||||| || ||||  ||||| ||||||||||||||||||  | ||| | |||| || |  | | |||   || || |  |||  |   |  |||   | |  | |||| |  |   || |        | |  ||     
TGGCTCACATCCATGTGCTGATCTGCGGTCAGGATATCTCTTGAATAGCAACATTGCTGGGCTTGAAAAGGCAGATGTTTTCCTTTTGGTTGGCACCCAGgtaattttctgacctctttattaaagtctaactttagtagtatatgactagcagggttgt-gttatttaaataacactgatgatttgtggtgtcagattgc---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098271|gb|HO760012.1|HO760012
EST:     CATTGCTGGTCTTGAAAAAAGCGGATGCGTTCCTGTTGGTTGGCACCCAT                         CCCCGGGTGGAAGCTGCCTTGGTTAATGACAGAATACGCAAATCTGTCTGA
genomic: CATTGCTGGTCTTGAAAAA-GCGGATGCGTTCCTGTTGGTTGGCACCCAGgtatatctct ... aaatttgcagCCACGGGTGGAAGCTGCCATGGTTAATGCCAGAATACGCAAAACTGTCAGA
EST: gi|308098030|gb|HO761201.1|HO761201
EST:     CCATTGCTGGTCTTGAAAAAGCGGATGCGTTCCTGTTGGTTGGCACCCAG                         CCACGGGTGGAAGCTGCCATGGTTAATGCCAGAATACGCAAAACTGTCAGA
genomic: C-ATTGCTGGTCTTGAAAAAGCGGATGCGTTCCTGTTGGTTGGCACCCAGgtatatctct ... aaatttgcagCCACGGGTGGAAGCTGCCATGGTTAATGCCAGAATACGCAAAACTGTCAGA
EST: gi|308098031|gb|HO761202.1|HO761202
EST:     CATTGCTGGTCTTGAAAAAGCGGATGCGTTCCTGTTGGTTGGCCACCCAG                         CCACGGGTGGAAGCTGCCATGGTTAATGCCAGAATACGCAAAACTGTCAG
genomic: -ATTGCTGGTCTTGAAAAAGCGGATGCGTTCCTGTTGGTTGGC-ACCCAGgtatatctct ... aaatttgcagCCACGGGTGGAAGCTGCCATGGTTAATGCCAGAATACGCAAAACTGTCAG
EST: gi|26058530|gb|CA801444.1|CA801444
EST:     GCATTGCTGGTCTTGAAAAAGCGGATGCGTTCCTGTTGGTTGGCACCCAG                         CCACGGGTGGAAGCTGCCATGGTTAATGCCAGAATACGCAAAACTGTCAGA
genomic: GCATTGCTGGTCTTGAAAAAGCGGATGCGTTCCTGTTGGTTGGCACCCAGgtatatctct ... aaatttgcagCCACGGGTGGAAGCTGCCATGGTTAATGCCAGAATACGCAAAACTGTCAGA