Sequence
atgc intronic sequence ATGC exonic sequenceCAGCTAAGTAGTGCCATATTTGGGTTATTTTATTGTGGATATCTTCCCTCTTTCTGGGTTAAACTTCGATGTAGTTTAGCAGCTCCAGCCTTGAATACAAgtaattgactttattaattcctctttcaattttggttctgccggttgtggggctgggaagggtcacatctatttcttcataattaataaaatagctaaag...
Basic information
species | Glycine max |
transcript | GLYMA11G30030.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G30030.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g03460.1 (Oryza sativa), 5'ss of exon 2
CAGCTAAGTAGTGCCATATTTGGGTTATTTTATTGTGGATATCTTCCCTCTTTCTGGGTTAAACTTCGATGTAGTTTAGCAGCTCCAGCCTTGAATACAAgtaattgactttattaattcctctttcaattttggttctgccggttgtggggctgggaagggtcacatctatttcttcataattaataaa-atagctaaag
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CAGCTGACTAGTTCAGTTTTTGGTCTCTTTTATTGTGGCTATCTTCCTTCTTTCTGGGTTAAGCTCCGATCTGGACTAGCTGCTCCTGCCTTAAATACAAgtatgttgttcaatcaagtt-tgttttgtcctttcttagttggggtgccttcgttttattaattccttttctgtctagtttgttagcaaatgtagaaatgg
upper sequence: GLYMA11G30030.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G053711_T05 (Zea mays), 5'ss of exon 2
CAGCTAAGTAGTGCCATATTTGGGTTATTTTATTGTGGATATCTTCCCTCTTTCTGGGTTAAACTTCGATGTAGTTTAGCAGCTCCAGCCTTGAATACAAgtaattgactttattaattcctctttcaattttggttctgccggttgtggggctgggaagggtcacatctatttctt--cataattaataaaatagctaaag
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CAGCTAACTAGTTCAGTTTTCGGGTTATTTTACTGCGGTTATCTACCTTCTTTCTGGGTTAAGCTTCGATCCGGACTAGCTGCCCCTGCCTTAAATACAAgtatgttgcttagttggatcatctt--gatacaagtactgtgtgttgaagggcgggcctggtgcagcggtagagcctaccgtttgtaactggaaggtcccgg
upper sequence: GLYMA11G30030.2 (Glycine max), 5'ss of exon 4
lower sequence: AT2G45150.2 (Arabidopsis thaliana), 5'ss of exon 3
CAGCTAAGTAGTGCCATATTTGGGTTATTTTATTGTGGATATCTTCCCTCTTTCTGGGTTAAACTTCGATGTAGTTTAGCAGCTCCAGCCTTGAATACAAgtaattgactttattaattcctctttca-attttggttctgccggttgt-ggggctgggaagggtcacatctatttcttca--taattaataaaatagctaaag------------------
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CAGCTGAGTAGTACAATGTTTGGTCTGTTTTACTGTGGTTATCTCCCTTCTTTCTGGGTTAAGCTTCGCTGTGGTTTAGCTGCTCCTGCGCTTAACACTGgcaagctctcgccttttctcctcttttatatctctaaagttcagattattgaggccaagctctctgctttgtcctacttcagatgtccttttgaccagttttttttcctattgtttctatag
upper sequence: GLYMA11G30030.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0048g00240.t01 (Vitis vinifera), 5'ss of exon 3
CAGCTAAGTAGTGCCATATTTGGGTTATTTTATTGTGGATATCTTCCCTCTTTCTGGGTTAAACTTCGATGTAGTTTAGCAGCTCCAGCCTTGAATACAAgtaattgactttattaattcctctttcaattttggttctgccggttgtggggctgggaagggtcacatctatttcttcataattaataaaatagctaaag-
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CAGCTTAGTAGTGCCATGTTTGGGCTATTTTATTGTGGTTATCTTCCTTGTTTCTGGGTTAAGCTTCGATGTGGTTTAGCAGCTCCTGCCTTAAACACCAgtaagaagtgcttctttttttctcttatcttctataaatttgaatattcaaagcaacctacatctgagcaaattttatctaggca-tgaattgtctttagtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19937553|gb|BQ081336.1|BQ081336EST: TTTCTGGGTTAAACTTCGATGTAGTTTAGCAGCTCCAGCCTTGAATACAA AAATAGGAGCAACATGGCCTATACTCCTTGGTGGCCAAGCTCATTGGACAG
genomic: TTTCTGGGTTAAACTTCGATGTAGTTTAGCAGCTCCAGCCTTGAATACAAgtaattgact ... tattttgtagAAATAGGAGCAACATGGCCTATACTCCTTGGTGGCCAAGCTCATTGGACAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGCTAAGTAGTGCCATATTTGGGTTATTTTATTGTGGATATCTTCCCTCTTTCTGGGTTAAACTTCGATGTAGTTTAGCAGCTCCAGCCTTGAATACAAgtaattgactttattaattcctctttcaattttggttctgccggttgtggggctgggaagggtcacatctatttcttcataattaataaaatagctaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC