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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGACATGTTCTATGAGCAGCACTAAGACCAATTTGAACCCTGAGAAAGTTCTGATATTTTCTCAATTTCTTGAGCATATACATGCCATTGAACAGCAGgtacagttttatgccgcattttgtgtgtgatctttcatgaattgttctattttattttttggcatctgtgaattcttttgcaaatgatcaaactattaaattggatttctctttggcag

Basic information

species Glycine max
transcript GLYMA11G21600.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G21600.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0067g03330.t01 (Vitis vinifera), 5'ss of exon 5
TCAGAC-ATGTTCTA-TGAGCAGCACTAAGACCAATTTGAACCCTGAGAAAGTTCTGATATTTTCTCAATTTCTTGAGCATATACATGCCATTGAACAGCAGgta-cagttttatgccgcattttgtgtgtgatcttt-catgaattgttctattttattttttggcatctgtgaattcttttgcaaatgatcaaactattaaattggatttctctttggcag
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--AGATTATACCAGACTGAATGATGAAACTTCCCATATATCCCCAGAGAAAGTTCTAATATTCTCTCAGTTTCTTGAGCATATACATGTTATTGAACAGCAGgtagctgcaatctgccttaaactagggctgaccttagtatgcttttcttgatgctaactcc-aattttttttttttcctttgccag-----------------------------------