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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCCAATTCCAAGCACTTAGGGACTACAGTATGGGATGCATCACTTGTGTTTGCCAAGTTTCTTgtaagttgtgtgctcctcacaatcacatgctctggaatgtcctgttactcttttcatgaatgagaaagtttattagaccctaagtgtatttttacgcaaa...

Basic information

species Glycine max
transcript GLYMA11G19970.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19970.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0061g00490.t01 (Vitis vinifera), 5'ss of exon 5
GATCCCAATTCCAAGCACTTAGGGACTACAGTATGGGATGCATCACTTGTGTTTGCCAAGTTTCTTgtaagttgtgtgctcctcacaatcacatgctctggaatgtcctgttactcttttcatgaatgagaaa--gtttattagaccctaagtgt---atttttacgcaaa
||||||||||| ||||| ||||| ||||| || |||||||||||| | || ||||  || ||||| ||||  ||| |  |  |||   | | |   |  | | | |  |  | |     | |  |||   |||  ||| ||  |       ||||   |||| || |||  
GATCCCAATTCGAAGCATTTAGGAACTACGGTTTGGGATGCATCAATGGTATTTGTGAAATTTCTGgtaa--tgtctattattcatt-tgagaattttagcattattttcatccatgggttaccaattcaaaattgttgatctgttgagttgtgttcaatttctatgca--

upper sequence: GLYMA11G19970.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0017g01120.t01 (Vitis vinifera), 5'ss of exon 5
GATCCCAATTCCAAGCACTTAGGGACTACAGTATGGGATGCATCACTTGTGTTTGCCAAGTTTCTTgtaagttgtgtgctcctcacaatcacatgctctggaatgtcctgttactcttttcatgaatgagaaa--gtttattagaccctaagtgt---atttttacgcaaa
||||||||||| ||||| ||||| ||||| || |||||||||||| | || ||||  || ||||| ||||  ||| |  |  |||   | | |   |  | | | |  |  | |     | |  |||   |||  ||| ||  |       ||||   |||| || | |  
GATCCCAATTCGAAGCATTTAGGAACTACGGTTTGGGATGCATCAATGGTATTTGTGAAATTTCTGgtaa--tgtctattattcatt-tgagaattttagcattattttcatccatgggttaccaattcaaaattgttgatctgttgagctgtgtttaatttctatgga--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13478092|gb|BG507710.1|BG507710
EST:     ACTTANGGACTACAGTATGGGATGCATCACTTGTGTTTGCCAAGTTTCTT                         GAACGGAATTGCAGAAAGGGAAGGTTTTCCCCAGCTAAACTTAAAGGAAAA
genomic: ACTTAGGGACTACAGTATGGGATGCATCACTTGTGTTTGCCAAGTTTCTTgtaagttgtg ... attgtttcagGAACGGAATTGCAGAAAGGGAAGGTTTTCCCCAGCTAAACTTAAAGGAAAA