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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACATCAAAGCAATCATGAATATTAGCCCTGCATTTCTTGGTGATCCTAGGGCAGTTAGCAATATATTTTCAACCGAAGGCAGTGTTACATTTGTCAGgtcagtatttgcaacaaaatcctctatttcaatctggcgtcttgttatgaaattatgaaatttgaaggtatgatttgaaatagtagaaatcatgattcat...

Basic information

species Glycine max
transcript GLYMA11G19570.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19570.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0061g01110.t01 (Vitis vinifera), 5'ss of exon 3
AGTACATCAAAGCAATCATGAATATTAGCCCTGCATTTCTTGGTGATCCTAGGGCAGTTAGCAATATATTTTCAACCGAAGGCAG---TGTTACATTTGTCAGgtcagtatttgcaacaaaatcctctatttcaatctggcgtcttgttatgaaattatgaaatttgaaggtat----gatttgaaatagtagaaatcatgattcat
   |||||||||| |||||||| ||| |||| ||||||||||||| ||| | ||| || || |||||||| ||  |||| | ||     ||| | ||||| |||| ||| |||| ||     ||||    |  ||   |   ||| || ||||||  || ||||| || ||  |    || |          | |   |   |||  
---ACATCAAAGCGATCATGAACATTGGCCCAGCATTTCTTGGTGTTCCAAAGGCTGTCAGTAATATATTCTCTGCCGAGGCCAAAGACGTTGCTTTTGTGAGgttagtctttggaatcttttccttctgtggaactggctttctggtaatgaaa--atcaaattggatggatttgaagactcttttcttctgcagagaaatttc--