Sequence
atgc intronic sequence ATGC exonic sequenceCAGAACATTACTTCAGAGCAATTGTGGTGTTAGTGTGCTGGATTTCATCCCGAGATCTGAGGGTGGGTCTCCACATATTTGCCTTAACCGCTTAAATCAGgtatatagtacatttaccaggtacaatgccacaaagtggactagctgaggttaaatgtgagaggcagattgtgttattccctctctataaacaaaagttgttttttttttattacaatgtgctccgcagtttaagctgttctacaaacagaattgaactattaatgcag
Basic information
species | Glycine max |
transcript | GLYMA11G19400.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G19400.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os11g05260.1 (Oryza sativa), 5'ss of exon 3
CAGAACATTACTTCAGAGCAATTGTGGTGTTAGTGTGCTGGATTTCATCCCGAGATCTGAGGGTGGGTCTCCACATATTTGCCTTAACCGCTTAAATCAGgtatata---gtacatttaccaggtacaatgccacaaa-gtggactagctgaggttaaatgtgag---------aggcagattgtgttattccctctctataaacaaaagttgttttttttttattacaatgtgctccgcagtttaagctgttctacaaacagaattgaactattaatgcag--------
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TCGGATTCTACTTCAGAGCAATTGTGGTGCTAGTGTGCTGGATTTCACCCCTCAGGCTGGTGGAGGGCCTCCAGCTGTATGCCTTAACCGCTTAAATCAGgtgtgtgtgtgcatgtgtgtaactttcagttggatggatgttttttttttccttttagtagtatgccttgcctaatgcaagtttcgtaccatcttctggataagtaaaataaaataattttgtgtcaaaaca-gaactacaggtggaaaaccagtaaatataggatttaattgtgtttccatgtttgcag
upper sequence: GLYMA11G19400.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0061g01340.t01 (Vitis vinifera), 5'ss of exon 4
CAGAACATTACTTCAGAGCAATTGTGGTGTTAGTGTGCTGGATTTCATCCCGAGATCTGAGGGTGGGTCTCCACATATTTGCCTTAACCGCTTAAATCAGgtatatagtacatttaccaggtacaatgccacaaagtggactagctgaggttaaatgtgagaggcagattgtgttattccctctctataaacaaaagttgttttttttttattacaatgtgctccgcagtttaagctgttctacaaacagaattgaactattaatgcag
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CAGGATTTTACTCCAGAGCAACTGCGGTGCAAGTGTGCTGGATTTCACTCCACAAGCTGATGGTGGGCCTCCATATATTTGTCTTAATCGTTTAAATCAGgtatatgg----tttaatgcatagaaaatt-taatatgcaaatttttacactatttttacttggttgcttg-gttgt-ctttatgtctgggccgtgtcaatgatttt--------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193421975|gb|FK388426.1|FK388426EST: CGAGATCTGAGGGTGGGTCTCCACATATTTGCCTTAACCGCTTAAATCAG ACCCCTGGTTCACCAATTGCTGGTGGGAAATCTGGAGGTAGAGAGCCAAGT
genomic: CGAGATCTGAGGGTGGGTCTCCACATATTTGCCTTAACCGCTTAAATCAGgtatatagta ... attaatgcagACCCCTGGTTCACCAATTGCTGGTGGGAAATCTGGAGGTAGAGAGCCAAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGAACATTACTTCAGAGCAATTGTGGTGTTAGTGTGCTGGATTTCATCCCGAGATCTGAGGGTGGGTCTCCACATATTTGCCTTAACCGCTTAAATCAGgtatatagtacatttaccaggtacaatgccacaaagtggactagctgaggttaaatgtgagaggcagattgtgttattccctctctataaacaaaagttgttttttttttattacaatgtgctccgcagtttaagctgttctacaaacagaattgaactattaatgcag
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