Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCGGAAAGCTTCACTGATTATGGATTAGGTCCTGTGCCCAAAAAATTCAAGGGAGAGTGTGTTACTGGTGAAAAATTTACACTAGCCAATTGCAACAAgtaagaactctttttggaattctaaatccatcatagactggtttttaagattgatgtacaaagtatatatattgacgtaaataaattatgaacttgaagc...

Basic information

species Glycine max
transcript GLYMA11G19130.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19130.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0080g00150.t01 (Vitis vinifera), 5'ss of exon 4
AATCGGAAAGCTTCACTGATTATGGATTAGGTCCTGTGCCCAAAAAATTCAAGGGAGAGTGTGTTACTGGTGAAAAATTTACACTAGCCAATTGCAACAAgt-----------------aagaac--tctttttggaattctaaatccatcatagactggtttttaagattgat-gtacaa-agtatatatattgacgtaaa----taaattatgaacttgaagc------------------------------------------
| || || ||||||| |||| | |||||||| | ||| || || |||||||||||||| ||||| | ||||||||| ||||||  |||||| ||||||| ||                 || |||  | || ||   | ||  ||||  | ||    |  || ||  | |  |   | ||  ||||    | |  | |||      |||  ||||   ||| |                                            
AGTCAGAGAGCTTCAATGATGAAGGATTAGGCCATGTACCAAAGAAATTCAAGGGAGAATGTGTCAATGGTGAAAATTTTACATCAGCCAACTGCAACAGgtgtttctttaaagcatgtaaaaaccattttctttccaatcataatcagttattaggtctttcttctgttgaaccattcagtagtactcgtgtgaatgtatgaagctaatctatggtattgtattgtaaatgcaaacttaaatttaattcaagaatggcatttgcag