1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATACAAATTTGTTGTTTCGGCCACAGAACCAAAGAAAGTTGTATCTCCTCCCATTACAAATATTCAGgtgtttgttcaaccttctttttagaaaaattcaatgtggttgaaatgataaataaaactaatgttgtatgaatataatctgcttcttgtcttattctttt...
species | Glycine max |
transcript | GLYMA11G18710.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CGGCCACAGAACCAAAGAAAGTTGTATCTCCTCCCATTACAAATATTCAG GGATGGTTGGCAGGACTGAAGACAGATGATGATGCTCATCAATTACCCACCEST: gi|8284372|gb|BE021931.1|BE021931
genomic: CGGCCACAGAACCAAAGAAAGTTGTATCTCCTCCCATTACAAATATTCAGgtgtttgttc ... atgattgcagGGATGGTTGGCAGGACTGAAGACAGATGATGATGCTCATCAATTACCCACC
EST: CGGCCCCAGAACCAAAGAAAGTTGTATCTCCTCCCATTACAAATATTCAG GGATGGTTGGCAGGACTGAAGACAGATGATGATGCTCATCAATTACCCACCEST: gi|18039922|gb|BM308216.1|BM308216
genomic: CGGCCACAGAACCAAAGAAAGTTGTATCTCCTCCCATTACAAATATTCAGgtgtttgttc ... atgattgcagGGATGGTTGGCAGGACTGAAGACAGATGATGATGCTCATCAATTACCCACC
EST: CAGCCCCAGAACCAAAGAAAGTTGTATCTCCTCCCATTACAAATATTCAG GGATGGTTGGCAGGACTGAAGACAGATGATGATGCTCATCAATTACCCACC
genomic: CGGCCACAGAACCAAAGAAAGTTGTATCTCCTCCCATTACAAATATTCAGgtgtttgttc ... atgattgcagGGATGGTTGGCAGGACTGAAGACAGATGATGATGCTCATCAATTACCCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACAAATTTGTTGTTTCGGCCACAGAACCAAAGAAAGTTGTATCTCCTCCCATTACAAATATTCAGgtgtttgttcaaccttctttttagaaaaattcaatgtggttgaaatgataaataaaactaatgttgtatgaatataatctgcttcttgtcttattctttt
- - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaaa