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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATATTGATCTTATAGCCAAGTTGGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCGgtatgttttattactaatgaattttaaatctgttttctatatagttagttgttttataaatgaatttccatgtccatgagtcatgaatcctgaaagtttg...

Basic information

species Glycine max
transcript GLYMA11G16220.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G16220.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G36890.1 (Arabidopsis thaliana), 5'ss of exon 4
GAAGATATTGATCTTATAGCCAAGTTGGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCGgtatgttttattac-taatgaattttaaatctgttttctatatagttagttgtt--ttataaatgaatttccatgt-ccatgagtcatgaatcctgaaagtttg
|||||| ||||||||||||   | || ||||| | |||||| |||||||| || ||||||||||| |||||||| ||||||||| | ||  |  ||   |||| |  || |   |   || ||| |  |   || ||  | | |||  ||   | || |    ||  | ||| |      
GAAGATGTTGATCTTATAGGACAATTAGGATTCGGTGCTTACAGATTTTCTATATCTTGGTCTCGAATTTTCCCTGgtatgtttaaatatattgtgttgtttatagttgctactttgttacttactaatccattttagttaattttggataaactataatgtgtgtgttctgcagt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193569511|gb|FK523126.1|FK523126
EST:     GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCG                         ATGGCTTAGGAAACGAAAATCAATGACGAAGGGA
genomic: GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCGgtatgtttta ... ttgggtatagATGGCTTAGGAA-CGAAAATCAATGACGAAGGGA
EST: gi|298170350|gb|HO018974.1|HO018974
EST:     GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCG                         ATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
genomic: GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCGgtatgtttta ... ttgggtatagATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
EST: gi|151395074|gb|EV264945.1|EV264945
EST:     GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCG                         ATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
genomic: GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCGgtatgtttta ... ttgggtatagATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
EST: gi|151393509|gb|EV263384.1|EV263384
EST:     GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCG                         ATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
genomic: GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCGgtatgtttta ... ttgggtatagATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
EST: gi|193692225|gb|FK631096.1|FK631096
EST:     GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCG                         ATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
genomic: GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCGgtatgtttta ... ttgggtatagATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
EST: gi|192300022|gb|FG991840.1|FG991840
EST:     GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCG                         ATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
genomic: GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCGgtatgtttta ... ttgggtatagATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
EST: gi|298189266|gb|HO037669.1|HO037669
EST:     GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCG                         ATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
genomic: GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCGgtatgtttta ... ttgggtatagATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
EST: gi|298196849|gb|HO041592.1|HO041592
EST:     GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCG                         ATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
genomic: GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCGgtatgtttta ... ttgggtatagATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
EST: gi|192296626|gb|FG991194.1|FG991194
EST:     GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCG                         ATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
genomic: GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCGgtatgtttta ... ttgggtatagATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
EST: gi|298177939|gb|HO023788.1|HO023788
EST:     GGGATTTGGTGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCG                         ATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
genomic: GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCGgtatgtttta ... ttgggtatagATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
EST: gi|208140882|gb|GD935686.1|GD935686
EST:     GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCG                         ATGGCTTAGGAACGAAAATCAATGAC
genomic: GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCGgtatgtttta ... ttgggtatagATGGCTTAGGAACGAAAATCAATGAC
EST: gi|192314382|gb|FK008058.1|FK008058
EST:     GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCG                         ATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
genomic: GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCGgtatgtttta ... ttgggtatagATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
EST: gi|192314383|gb|FK008059.1|FK008059
EST:     GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCG                         ATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
genomic: GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCGgtatgtttta ... ttgggtatagATGGCTTAGGAACGAAAATCAATGACGAAGGGATAACTTTTTATAACAACA
EST: gi|193567955|gb|FK524292.1|FK524292
EST:     GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCG                         ATGGCTTAGGAACGAAAATCAATGACGAAGGGA
genomic: GGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCGgtatgtttta ... ttgggtatagATGGCTTAGGAACGAAAATCAATGACGAAGGGA