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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATATTTGGTCGGTTGGTTGCATTTTGATGGAGATAGTTAGAAGGGAGCCTTTATTTCCTGGTAAAGATTATGTCCAACAGTTGGCCCTTATAACTGAGgtatttgttctttctcttaatctcttcaatactggccttgggtcgaattggcagataaatttaatatgctaggatctttgtcttctgaaatctgttttaatttgtattagtagttaaaacaagcttccaaagaacaaattcctcataatcatctctcaaaacag

Basic information

species Glycine max
transcript GLYMA11G15590.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15590.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0004g03620.t01 (Vitis vinifera), 5'ss of exon 4
TGATATTTGGTCGGTTGGTTGCATTTTGATGGAGATAGTTAGAAGGGAGCCTTTATTTCCTGGTAAAGATTATGTCCAACAGTTGGCCCTTATAACTGAGgtatttgttctttctcttaatctcttcaatactggccttgg-gtcgaattggcagataaat---ttaatatgc---taggatctttgtcttctgaaatc--tgttttaatttgtattagtagttaaaacaagcttccaaagaacaaattcctcataatcatctctcaaaacag--------------------
|||||| ||||| |||||||||||||||||||||||  ||||||| |||||  | |||||||||||||| ||||| || ||| |||  |||||||||||||||||| |  || ||||| || ||  |   | |     |     |     | |||     |   ||  | ||    || || || | | |   |||           || ||| ||   | |  |    |    |||   ||| |   |  |  |  |||    | ||||                       
TGATATCTGGTCAGTTGGTTGCATTTTGATGGAGATCCTTAGAAGAGAGCCACTTTTTCCTGGTAAAGACTATGTTCAGCAGCTGGTGCTTATAACTGAGgtatttttctttcctctttatttccccgccagtttttctattagcaggccgacagggcgttctcttggtttgggtatatgaactctatttgtagaagatatcaggacaagttgcatatattggcattgtatttatcctgtgaatattattatggtggtcactaatgaaaattttcctggttatcccaaaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193700563|gb|FK636396.1|FK636396
EST:     CTTTATTTCCTGGTAAAGATTATGTCCAACAGTTGGCCCTTATAACTGAG                         TTACTAGGTTCACCAAATGACTCCGGATCTTGGATTCCTCAGAACGTGATA
genomic: CTTTATTTCCTGGTAAAGATTATGTCCAACAGTTGGCCCTTATAACTGAGgtatttgttc ... ctcaaaacagTTACTAGGTTCACCAAATGACTC-GGATCTTGGATTCCTCAGAA-GTGATA