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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAACCCATTGGCAGgtactttttgtctttattttgttggttttccagttcttaatcaacggttctgtataataataccctgagacatgaagccaataaacaccggtcctgtgta...

Basic information

species Glycine max
transcript GLYMA11G14960.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14960.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0004g04460.t01 (Vitis vinifera), 5'ss of exon 4
GAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAACCCATTGGCAGgtactttttgtctttattttgttggttttccagttcttaatcaacggttctgtataataataccctgagaca----tgaagc-caataaacaccggtcctgtgta
|||||||||||||| ||||| ||  |||| |||  ||| ||||||||||| || ||||||||||| |||    | |||  | ||   |||     | |  ||||    ||    ||| |  ||    |||       | | ||    |||| |    |  |     
GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttacagtctatcatctttaattttattatgtggatcatgaatttatgatatttctatatggagttggttgtaaggcattttaaaaatgaatttt-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14258971|gb|BG881879.1|BG881879
EST:     ACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAACCCATTGGCAG                         GTTGTTTACCAACTCTGGCTACAATTCCAGTCTGGATTGGTCTCTACCAAG
genomic: ACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAACCCATTGGCAGgtactttttg ... atttgtatagGTTGTTTACCAACTCTGGCTACAATTCCAGTCTGGATTGGTCTCTACCAAG
EST: gi|208284429|gb|GE085047.1|GE085047
EST:     ACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAACCCATTGGCAG                         GTTGTTTACCAACTCTGGCTACAATTCCAGTCTGGATTGGTCTCTACCAAG
genomic: ACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAACCCATTGGCAGgtactttttg ... atttgtatagGTTGTTTACCAACTCTGGCTACAATTCCAGTCTGGATTGGTCTCTACCAAG
EST: gi|23052844|gb|BU577335.1|BU577335
EST:     ACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAACCCACTGGCAG                         GTTGTTTACCAACTTTGGCTACAATTCCAGTCTGGATTGGTCTCTACCAAG
genomic: ACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAACCCATTGGCAGgtactttttg ... atttgtatagGTTGTTTACCAACTCTGGCTACAATTCCAGTCTGGATTGGTCTCTACCAAG