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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAGCTACTACAGAAGAAAAAAACTTGGTTTATCAGGAAATCATGCCACATGCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGgtaatcatcactcttgcaatttattttttctttcttgaatcttgcatcaacagtagttggcaatgccataatggtataatgcag

Basic information

species Glycine max
transcript GLYMA11G14530.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14530.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 3
AACAGCTACTACAGAAGAAAAAAACTTGGTTTATCAGGAAATCATGCCACATGCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGgtaatcatcactcttgcaatttattttttctttcttgaatcttgcatcaaca-gtagttg---gcaatgccataatggt-ataatgcag-----------------------------------------
||| || || |||||||| |||||| ||||||| ||||||||||| || || || ||  |||||||||| ||||| |||||||| |||||  | |||||||||   |   |||||    ||   |  ||||| | ||     |  ||      |||  ||    || |   || ||  | || ||  |                                          
AACGGCCACAACAGAAGAGAAAAACATGGTTTACCAGGAAATCATTCCCCAAGCTCTCTCTTTGATGACAGATGTGTTTGGTAACTATGTTATACAAAAGgtatgaaattctcttttcgttgcatgattcttgcatgcgcgctatatgtgtgtgtatctgcacacattattattattattattatataattttaaatggttttacatttgcaactgtttctaattttcag