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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTCAGCTTTTATCGTGTTTTGTGCCTCTTTCAATATGTTTTGTCAACTTATGTTGGTACCAATGgtggacaggaagccaaccctagactctcttgttttggactcatgaaaaatagtagggatggcagaagctatagtacaaatttagccttcactcctccagagtacttgaggacaggtaatatagcctttttgttattattgtttacttgag

Basic information

species Glycine max
transcript GLYMA11G14240.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14240.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0004g05810.t01 (Vitis vinifera), 5'ss of exon 5
GTATTTCAGCTTTTATCGTGTTTTGTGCCTCTTTCAATATGTTTTGTCAACTTATGTTGGTACCAATGgtggacaggaagccaaccctagactctcttgttttggactcatgaaaaatagtagggatggcagaagctatagtacaaatttagccttcactcctccagagtacttgaggacaggtaata--tagc------ctttttgttattattgtttacttgag--------------------------------------------------------
                                                                                  || || || ||||| || ||||| || ||||| ||||| || ||||||| ||||||||||||||| || |||||||| || ||||| |||||||| ||||||||||  |||       || | || | ||||  |   |||                                                           
----------------------------------------------------------------------------------AATCCCAGGCTCTCCTGCTTTGGCCTTATGAAGAATAGCAGAGATGGCAAAAGCTATAGTACAAACTTGGCCTTCACCCCGCCAGAATACTTGAGAACAGgtaatagctagtggaatgctatgtgatgttataatgatcttcttttcacatgcaaagggcatgcagcattatttgttttattgccattgcagtatgttaa

upper sequence: GLYMA11G14240.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S122_66V6.1 (Physcomitrella patens), 5'ss of exon 5
GTATTTCAGCTTTTATCGTGTTTTGTGCCTCTTTCAATATGTTTTGTCAACTTATGTTGGTACCAATGgtggacaggaagccaaccctagactctcttgttttggactcatgaaaaatagtagggatggcagaagctatagtacaaatttagccttcactcctccagagtacttgaggacaggtaatatagcctt---tttgttatt--attgtttacttgag--------------------------------------------------------------
                                                                                   | ||  | |||||||||||||| |||||||| || ||| | ||||| | |||||||||||| ||| | |||| |||||| || || ||||| || || ||||    |  | |   | | || ||  |||||||| |  |                                                               
----------------------------------------------------------------------------------GATCCGCGCCTCTCTTGTTTTGGCCTCATGAAGAACAGTCGCGATGGAAAAAGCTATAGTACCAATCTGGCCTACACTCCCCCTGAATACTTAAGAACTGgtaccgaaatcctgaatgttttgttggattgtttattgaacaatttgttattgttactttcaatttgcatcattctgacgattcttggtacttcattttgcag

upper sequence: GLYMA11G14240.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S9_348V6.1 (Physcomitrella patens), 5'ss of exon 5
--------------GTATTTCAGCTTT--------TATCGTGTTTTGTGCCTCTTTCAATAT--GTTTTGTCAACTTATGTTGGTACCAATGgtggacaggaagccaaccct---agactctcttgttttggactcatgaaaaatagtagggatggcagaagctatagt---acaaatttagccttcactcctccagagtacttgaggacaggtaatatagcctttttgttattatt-gtttacttgag----------------------
               | |||  |  |          | |     | |       | ||  |    ||| |   ||     |    |  | | | | |||||    ||||  |    |  |||  ||    |  ||  |||   |  |  ||| | ||   |  | |        ||  |     |||||| |   ||   |   |  ||       |  | |     || |  | || | | | |   |                      
GACCCACGTCTCTCCTGTTTTGGGCTCATGAAGAACAGCAGAGATGGAAAAAGCTACAGCACCAATTTGGCTTACACTCCTCCTGAGTACTTGAGAACAGgttaacaactttttgggcatcttctgggaagagcttgtgagggaatggtgggttagctatatttttgtcttcgtaagatcgatgttcactgcctaagtcaatcggtcgaggaaccctggaactcccgtgattctgtttggtcagtgacggtcatttttcgatattttgcag