Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTCAAAAGTTTGAACAAAGCTGCAAGGGATCTCATCCAGCGTCTTCAGAAGATTGATGGTGACAACTATCCTGAGgtacttactactcattcacattggccatctccctagctcacattagcctgattgaacttttctttttgcag

Basic information

species Glycine max
transcript GLYMA11G12270.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G12270.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G162461_T01 (Zea mays), 5'ss of exon 6
GGTCTCAAAAGTTTGAACAAAGCTGCAAGGGATCTCATCCAGCGTCTTCAGAAGATTGATGGTGACAACTATCCTGAGgtacttactactcattcacattggccatctccctagctcacattagcctgatt-gaacttttctttttgcag-----------------------------
||  | ||    || |  |||||||||||||| |||||       ||||||||||||||||||||||| ||||| |||||| |  ||  | ||     ||   | |      |  | |  | |   |  |  | | | || || || |                               
GGGATGAAGCAATTCAGTAAAGCTGCAAGGGAGCTCATTGGCATGCTTCAGAAGATTGATGGTGACAATTATCCAGAGgtaatccct-ttgatatgtgttttgccttcagacattttatctgaattttgtaagcaatattgttcttaccatgccagtttttcttctcttttggtgctag

upper sequence: GLYMA11G12270.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G36490.1 (Arabidopsis thaliana), 5'ss of exon 4
GGTCTCAAAAGTTTGAACAAAGCTGCAAGGGATCTCATCCAGCGTCTTCAGAAGATTGATGGTGACAACTATCCTGAGgtacttactactcattcacattggccat-ctccctagctcac--attagcc--tgattgaacttttct----ttttgcag---
|| || ||||  || ||||| ||||| || ||  | ||    |||||||| ||| | |||||||||||||||||||||||      ||    |   |||   | || ||      ||     || | ||  |  || ||||||        |||| |    
GGACTGAAAAACTTCAACAAGGCTGCTAGAGACTTGATTACTCGTCTTCAAAAGGTCGATGGTGACAACTATCCTGAGgtgtgatttatatctctgcatgctcaattcttttccactggtctatgaaccagtagtttaactttgtaacgactttggatcag