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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTTTGAGAAAGCTTTTAAGATAAAGTTTCCTGCTTGCACGATTGCCGCCAAAAGGCACATTGATTCAAGCACCACGATACTAGATGTTCAAGGCGTGgtatgttgccgttaattgttcctcattgtacgtgcctgtggattcctgtgacatggaaaatttatgttgtagtttcaacttttag

Basic information

species Glycine max
transcript GLYMA11G12260.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G12260.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g04020.1 (Oryza sativa), 5'ss of exon 5
GGAGTTTGAGAAAGCTTTTAAGATAAAGTTTCCTGCTTGCACGATTGCCGCCAAAAGGCACATTGATTCAAGCACCACGATACTAGATGTTCAAGGCGTGgtatgttgccg-----ttaattgttc--ctcattgtacgtgcctgtggattcctgtgacatggaaaatttatgttgtagtttcaacttttag-
||| |||||       ||   ||| ||||| || || ||| |  |||| || ||||||||||||||||| ||||| || || || |||||||| || |||||||| ||| |     |||||       || ||| | | | | | |   ||| | | ||   |  |  |  |  |  ||      |||||   
GGAATTTGAACGGAGCTTCTTGATCAAGTTCCCAGCATGCTCTCTTGCTGCAAAAAGGCACATTGATTCGAGCACAACAATTCTTGATGTTCAGGGTGTGgtatgctgctgaagctttaatctccagactgattattctttctttttt-ttcttttcactcaggcatgtgctaattgagcacattcttttcag

upper sequence: GLYMA11G12260.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G171354_T03 (Zea mays), 5'ss of exon 5
GGAGTTTGAGAAAGCTTTTAAGATAAAGTTTCCTGCTTGCACGATTGCCGCCAAAAGGCACATTGATTCAAGCACCACGATACTAGATGTTCAAGGCGTGgtatgttgccgttaatt--gttcctcattgtacgtgcctgtggattcctgtgaca-tggaaaatttatgttgtagtttcaacttttag---
|||||||||||     ||   ||| || ||||| |||||| |  |||| || ||||||||||||||||| ||||| || || || ||||| || ||||||||||||| | |   |||   |   ||||  | | |  || ||     || ||||| | ||  | |  |  | |  |  | |  |||     
GGAGTTTGAGAGGAGCTTCTTGATTAAATTTCCAGCTTGCTCTGTTGCTGCAAAAAGGCACATTGATTCCAGCACAACAATTCTGGATGTCCAGGGCGTGgtatgttactgaggatttaatctttcatgatgcttttctttgtgcaact-tgacagttgatgagtgctactttcatacctatgtttcatag

upper sequence: GLYMA11G12260.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 5
GGAGTTTGAGAAAGCTTTTAAGATAAAGTTTCCTGCTTGCACGATTGCCGCCAAAAGGCACATTGATTCAAGCACCACGATACTAGATGTTCAAGGCGTGgtatgttgccgttaattgttcctcattgtacgtgcctgtggat-tcctgtgacatggaaaatttatg---ttgtagtttcaacttttag---------------
|||||| ||||||   |||    |||||||||| || || || ||||| || || |||||||| ||||| ||||| || ||  | |||||||||||||||||||| |  |  ||||| || ||   |   | |  |     || |  ||   ||   ||||| | |    || |  |||| | || |                 
GGAGTTCGAGAAAAGCTTTGCCCTAAAGTTTCCAGCCTGTACTATTGCTGCAAAGAGGCACATAGATTCCAGCACAACTATTTTGGATGTTCAAGGCGTGgtatgctttctgtaattttttcttggtcaccattgcaaaatatattttggcccaatcaaaatgtttaaacttatcttttctatttctgatcatcaattttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208266803|gb|GE061918.1|GE061918
EST:     TAGATGTTCAAGGCGTG                         GGCCTTAAGAACTTTACAAAGTCTGCCCGGGACCTCATTATGCGGTTACAA
genomic: TAGATGTTCAAGGCGTGgtatgttgcc ... caacttttagGGCCTTAAGAACTTTACAAAGTCTGCCCGGGACCTCATTATGCGGTTACAA
EST: gi|193404447|gb|FK365356.1|FK365356
EST:     CCAAAAGGCACATTGATTCAAGCACCACGATACTAGATGTTCAAGGCGTG                         GGCCTTAAGAACTTTACAAAGTCTGCCCGGGACCTCATTATGCGGTTACAA
genomic: CCAAAAGGCACATTGATTCAAGCACCACGATACTAGATGTTCAAGGCGTGgtatgttgcc ... caacttttagGGCCTTAAGAACTTTACAAAGTCTGCCCGGGACCTCATTATGCGGTTACAA
EST: gi|8284166|gb|BE021725.1|BE021725
EST:     CCAAAAGGCACATTGATTCAAGCACCACGATACTAGATGTTCAAGGCGTG                         GGCCTTAAGAACTTTACAAAGTCTGCCCGGGACCTCATTATGCGGTTACAA
genomic: CCAAAAGGCACATTGATTCAAGCACCACGATACTAGATGTTCAAGGCGTGgtatgttgcc ... caacttttagGGCCTTAAGAACTTTACAAAGTCTGCCCGGGACCTCATTATGCGGTTACAA
EST: gi|193495792|gb|FK462880.1|FK462880
EST:     ACATTGATTCAAGCACCACGATACTAGATGTTCAAGGCGTG                         GGCCTTAAGAACTTTACAAAGTCTGCCCGGGACCTCATTATGCGGTTACAA
genomic: ACATTGATTCAAGCACCACGATACTAGATGTTCAAGGCGTGgtatgttgcc ... caacttttagGGCCTTAAGAACTTTACAAAGTCTGCCCGGGACCTCATTATGCGGTTACAA