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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTCCTTTCACAACTACAGAATCTGGTCCTTTTTGGGCCTCCTTATGACCACTTACACTGCTTGGTATCTCACAGTTGCCTCTCTCCTTCACGGTCAGgtaacaataataaatttacaaacagatacgtactactacattattattattattactgatattcaattattaattatatgcaattgtaattaatttagtagtaatgctatgcttttccgattgttattatgcttag

Basic information

species Glycine max
transcript GLYMA11G11310.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11310.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G045057_T02 (Zea mays), 5'ss of exon 4
TCCTTCCTTTCACAACTACAGAATCTGGTCCTTTTTGGGCCTCCTTATGACCACTTACACTGCTTGGTATCTCACAGTTGCCTCTCTCCTTCACGGTCAGgtaacaataa--taaatttacaaacagatacgtactactacattattattattattac-tgatattcaattattaattatatgcaattgtaattaat-ttagtagtaatgctatgcttttccgattgttattatgcttag
 || ||||| ||||||||| | |||||||||||  | |||||||| |||||||| ||||| || ||||| |||||  ||||| |  ||   ||||||||||||   ||    | |   |   |   ||| |  |||| |  |||  |    |  || |   || | ||     |  |  |||      |||   ||  ||| | |     | |   | ||                    
CCCCTCCTTCCACAACTACCGGATCTGGTCCTTCCTCGGCCTCCTCATGACCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgcgctgagcgtgtgatatgatgc--actagtcgattgatcgcctgcttgcgctatgtccagcagatcgt-gtatatggccgtaccaaacattaattgatggacgacaatattatag----------------

upper sequence: GLYMA11G11310.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G21050.1 (Arabidopsis thaliana), 5'ss of exon 4
TCCTTCCTTTCACAACTACAGAATCTGGTCCTTTTTGGGCCTCCTTATGACCACTTACACTGCTTGGTATCTCACAGTTGCCTCTCTCCTTCACGGTCAGgtaacaataataaatttacaaacagatacgtactactacattattattattattactgatattcaattattaattatatgcaattgtaattaatttagtagtaatgctatgcttttccgattgttattatgcttag
||||||||| ||||||||||| |||||||| ||| | || ||| | ||||||||||||||||||||||| |||||  |||||||| |||| || || |||||||| |        ||  |   |  ||  | | || |  | |  ||||  ||  ||| |  |   || |   |||   | | |   ||  |       |||                                  
TCCTTCCTTCCACAACTACAGGATCTGGTCTTTTCTTGGACTCTTGATGACCACTTACACTGCTTGGTACCTCACCATTGCCTCTATCCTCCATGGACAGgtaactagttctttctttaatctaattagtttcaacgagttaaagattagaatagctggtgat--gttgtggcttaaggggactcaaaaacatcaacaaagt----------------------------------

upper sequence: GLYMA11G11310.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0038g02140.t01 (Vitis vinifera), 5'ss of exon 4
TCCTTCCTTTCACAACTACAGAATCTGGTCCTTTTTGGGCCTCCTTATGACCACTTACACTGCTTGGTATCTCACAGTTGCCTCTCTCCTTCACGGTCAGgtaacaataataaattta---caaacagatacgtactac-tacattattattattattactgatattcaattattaattatatgcaattgtaattaatttagtagtaatgctatgcttttccgattgttattatgcttag
|||||| || ||||||||||||||||||||||| |||||| |  | ||||||||||||||||| ||||| ||||| ||||| || ||||| || || ||||||  |   ||| || |    ||| || |||   |  || ||   |||||  |||| ||      || | ||||| ||| |||  | || |   | | |  | ||                                   
TCCTTCATTCCACAACTACAGAATCTGGTCCTTCTTGGGCTTGATCATGACCACTTACACTGCCTGGTACCTCACTGTTGCATCCCTCCTCCATGGCCAGgtactatacatatatctcattcaaccaaatatccaaaacatatgatattaaaattagtaaatgattttatttatttatt-tatttatttatttgttaatgggcag-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24206334|gb|BU965587.1|BU965587
EST:     CTTCTTACACTGCTTGGTATCTCACAGTTGCCTCTCTCCTTCACGGTCAG                         ATGGAAGGAGTTAAGCATTCGGGTCCGACCAAATTGGTTCTATATTTTACG
genomic: CCACTTACACTGCTTGGTATCTCACAGTTGCCTCTCTCCTTCACGGTCAGgtaacaataa ... ttatgcttagATGGAAGGAGTTAAGCATTCGGGTCCGACCAAATTGGTTCTATATTTTACG
EST: gi|209726328|gb|BW659628.1|BW659628
EST:     CCACTTACACTGCTTGGTATCTCACAGTTGCCTCTCTCCTTCACGGTCAG                         ATGGAAGGAGTTAAGCATTCGGGTC
genomic: CCACTTACACTGCTTGGTATCTCACAGTTGCCTCTCTCCTTCACGGTCAGgtaacaataa ... ttatgcttagATGGAAGGAGTTAAGCATTCGGGTC
EST: gi|298180126|gb|HO025341.1|HO025341
EST:     CCACTTACACTGCCTGGTATCTCACAGTTGCCTCTCTCCTTCACGGTCAG                         ATGGAAGGAGTTAAGCATTCGGGTCCGACCAAATTGGTTCTATATTTTACG
genomic: CCACTTACACTGCTTGGTATCTCACAGTTGCCTCTCTCCTTCACGGTCAGgtaacaataa ... ttatgcttagATGGAAGGAGTTAAGCATTCGGGTCCGACCAAATTGGTTCTATATTTTACG