Sequence
atgc intronic sequence ATGC exonic sequenceGTGTGGGAATATCAATTGGGCAAAGCGGACTAAATGCAATATCTGCAATACAAATAAGCCTGGGCATAATGAGGGTGGTGTAAGgtattggattgaattcttttatataccttcatgatgactatctatttgcatgctaggaagtgtgtgggtgtgcttttggtctttttcctgaagtcttttt...
Basic information
species | Glycine max |
transcript | GLYMA11G11060.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G11060.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g12800.1 (Oryza sativa), 5'ss of exon 5
GTGTGGGAATATCAATTGGGCAAAGCGGACTAAATGCAATATCTGCAATACAAATAAGCCTGGGCATAATGAGGGTGGTGTAAGgtattggattgaattcttttatataccttcatgatgactat-ctatttgcatgctaggaagtgtgtgggtgtgcttttggtctttttcctgaagtcttttt---
|||||| || || |||||||||||||||| ||||| |||||||| || || | |||||| || || ||||| |||||||| ||||| || | | | || | | | | || || | | | || || | | || ||| | | ||| |||| |||| | |||| | | |
GTGTGGCAACATAAATTGGGCAAAGCGGATGAAATGTAATATCTGTAACACCACTAAGCCAGGTCACAATGAAGGTGGTGTGAGgtaagacatgcacaacctgcatgtggcatgttcattgctttgccagttaaatagtcgaaa-tgtattatt-tgcctttg--ctttggcatgaactatggtgagc
upper sequence: GLYMA11G11060.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G50300.1 (Arabidopsis thaliana), 5'ss of exon 5
GTGTGGGAATATCAATTGGGCAAAGCGGACTAAATGCAATATCTGCAATACAAATAAGCCTGGGCATAATGAGGGTGGTGTAAGgtattggattgaattcttttatataccttcatgatgactatctatttgcatgctaggaagtgtgtgggtgtgcttttggtctttttcctgaagtcttttt-
|||||| ||| |||| ||||| || || ||||| ||||||||||| || ||||| ||||| || ||||| |||||||| |||||| | | || | | ||| | | | | | | ||||| | || || | || | | | |||| | | |
GTGTGGCAATGTCAACTGGGCGAAACGTCTAAAATGTAATATCTGCAACACCAATAAACCTGGTCAGAATGAAGGTGGTGTGAGgtat-gactcaaagccagtgataagattgcctttgtattgttatcttgcaatgttcgagctgaggatttggattataaatgattttacagtgaatgtagga
upper sequence: GLYMA11G11060.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0010g01410.t01 (Vitis vinifera), 5'ss of exon 4
GTGTGGGAATATCAATTGGGCAAAGCGGACTAAATGCAATATCTGCAATACAAATAAGCCTGGGCATAATGAGGGTGGTGTAAGgtattg--gattgaattcttttatataccttcatgatgactatctatttgcatgctaggaagtgtgtgggtgtgcttttggtctttttcctgaagtcttttt
|||||| || || || |||||||||||||| || |||||||| ||||| || ||||||||||| |||||||| |||||||| ||||| | ||| | | ||||| | | ||| || ||| | ||| || | || |||| || || |||
GTGTGGCAACATTAACTGGGCAAAGCGGACAAAGTGCAATATATGCAACACCAATAAGCCTGGCCATAATGAAGGTGGTGTGAGgtagggatgatggttatgttttaattggatggatgttggttattt-tttatctgtgcatatgt-cagaaccacaatttttagctgacaataatcttcctttcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58014412|gb|CX701154.1|CX701154EST: TGCAATATCTGCAATACAAATAAGCCTGGGCATAATGAGGGTGGTGTAAG AGGAGGACGAGGTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATAGAAGA
genomic: TGCAATATCTGCAATACAAATAAGCCTGGGCATAATGAGGGTGGTGTAAGgtattggatt ... aattaaacagAGGAGGACGAGGTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATAGAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGTGGGAATATCAATTGGGCAAAGCGGACTAAATGCAATATCTGCAATACAAATAAGCCTGGGCATAATGAGGGTGGTGTAAGgtattggattgaattcttttatataccttcatgatgactatctatttgcatgctaggaagtgtgtgggtgtgcttttggtctttttcctgaagtcttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgggtg