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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTGAACCACAAAAACATTGTAAAGTATCTTGGATCTTCAAAGACAAAAAGTCACCTGCACATAGTTCTTGAgtaagtgggctctactctttcacagcataaggaaatttaatcatagcatcatttgaagggtatttagtttcatgtttttttgcaatatcacag

Basic information

species Glycine max
transcript GLYMA11G10810.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G10810.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g02270.t01 (Vitis vinifera), 5'ss of exon 4
AATTTGAACCACAAAAACATTGTAAAGTATCTTGGATCTTCAAAGACAAAAAGTCACCTGCACATAGTTCTTGAgtaagtgggctctactctttcacagcataaggaaatttaatcatagcatcatttgaagggtatttagtttcatgtttttttgcaatatcacag---------------
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AATTTGAACCACAAAAACATTGTGAAATATCTTGGATCTTTGAAGACAAGGAGTCATCTGCACATAATTCTTGAgtaagcaaacttaaaattttcctgcttttaacagatctactc-ttgaattgaataaatattctgcagta-caaacttagttgcattttctgaatctttttccaaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38193206|gb|CF922412.1|CF922412
EST:     AAGTATCTTGGATCTTCAAAGACAAAAAGTCACCTGCACATAGTTCTTGA                         GTATGTGGAGAATGGCTCACTTGCAAATATTATCAAGCCAAATAAATTTGG
genomic: AAGTATCTTGGATCTTCAAAGACAAAAAGTCACCTGCACATAGTTCTTGAgtaagtgggc ... aatatcacagGTATGTGGAGAATGGCTCACTTGCAAATATTATCAAGCCAAATAAATTTGG
EST: gi|208073636|gb|GD869457.1|GD869457
EST:     AAGTATCTTGGATCTTCAAAGACAAAAAGTCACCTGCACATAGTTCTTGA                         GTATGTGGAGAATGGCTCACTTGCAAATAATATCAAG
genomic: AAGTATCTTGGATCTTCAAAGACAAAAAGTCACCTGCACATAGTTCTTGAgtaagtgggc ... aatatcacagGTATGTGGAGAATGGCTCACTTGCAAATATTATCAAG